Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SaO82_RS04915 Genome accession   NZ_CP038819
Coordinates   985493..986479 (+) Length   328 a.a.
NCBI ID   WP_000959277.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O82     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 980493..991479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO82_RS04890 (SaO82_0918) opp4B 980696..981658 (+) 963 WP_000593417.1 oligopeptide ABC transporter permease -
  SaO82_RS04895 (SaO82_0919) opp4C 981670..982551 (+) 882 WP_001180270.1 oligopeptide ABC transporter permease -
  SaO82_RS04900 (SaO82_0920) trpS 982593..983582 (-) 990 WP_000448929.1 tryptophan--tRNA ligase -
  SaO82_RS04905 (SaO82_0921) spxA 983877..984272 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  SaO82_RS04910 (SaO82_0922) mecA 984653..985372 (+) 720 WP_001217727.1 adaptor protein MecA -
  SaO82_RS04915 (SaO82_0923) coiA 985493..986479 (+) 987 WP_000959277.1 competence protein CoiA family protein Machinery gene
  SaO82_RS04920 (SaO82_0924) pepF 986527..988335 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  SaO82_RS04925 (SaO82_0925) yjbH 988796..989602 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  SaO82_RS04930 (SaO82_0926) - 989625..989990 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  SaO82_RS04935 (SaO82_0927) - 990094..990687 (-) 594 WP_000224616.1 CYTH domain-containing protein -
  SaO82_RS04940 (SaO82_0928) - 990873..991220 (+) 348 WP_001242107.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38695.27 Da        Isoelectric Point: 9.5127

>NTDB_id=355797 SaO82_RS04915 WP_000959277.1 985493..986479(+) (coiA) [Staphylococcus aureus strain O82]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKGNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLSDNLNYFKLKKFIVALDSKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=355797 SaO82_RS04915 WP_000959277.1 985493..986479(+) (coiA) [Staphylococcus aureus strain O82]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTTAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAGGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTTG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGATAGCAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.951

100

0.97
  coiA Staphylococcus aureus N315

96.951

100

0.97

Multiple sequence alignment