Detailed information NTG0355021

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: EQK04_RS16440
• Genome accession: NZ_CP038517
• Coordinates: 3181501..3182187 (-)
• Length: 228 a.a.
• NCBI ID: WP_026050153.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain SCU11
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3176501..3187187

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQK04_RS16405 (EQK04_16495)	fliW	3176637..3177071 (-)	435	WP_017368139.1	flagellar assembly protein FliW	-
EQK04_RS16410 (EQK04_16500)	-	3177100..3177678 (-)	579	WP_017368140.1	DUF6470 family protein	-
EQK04_RS16415 (EQK04_16505)	flgL	3177725..3178636 (-)	912	WP_017368141.1	flagellar hook-associated protein FlgL	-
EQK04_RS16420 (EQK04_16510)	flgK	3178645..3180165 (-)	1521	WP_017368142.1	flagellar hook-associated protein FlgK	-
EQK04_RS16425 (EQK04_16515)	-	3180181..3180663 (-)	483	WP_008348261.1	flagellar protein FlgN	-
EQK04_RS16430 (EQK04_16520)	flgM	3180682..3180945 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
EQK04_RS16435 (EQK04_16525)	-	3181025..3181444 (-)	420	WP_017357864.1	TIGR03826 family flagellar region protein	-
EQK04_RS16440 (EQK04_16530)	comFC	3181501..3182187 (-)	687	WP_026050153.1	amidophosphoribosyltransferase	Machinery gene
EQK04_RS16445 (EQK04_16535)	-	3182184..3182477 (-)	294	WP_008348267.1	late competence development ComFB family protein	-
EQK04_RS16450 (EQK04_16540)	comFA	3182542..3183921 (-)	1380	WP_026050154.1	DEAD/DEAH box helicase	Machinery gene
EQK04_RS16455 (EQK04_16545)	-	3184041..3184883 (-)	843	WP_007499966.1	DegV family protein	-
EQK04_RS16460 (EQK04_16550)	degU	3185095..3185784 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
EQK04_RS16465 (EQK04_16555)	degS	3185849..3187024 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26195.68 Da
• Isoelectric Point: 10.2584

>NTDB_id=355021 EQK04_RS16440 WP_026050153.1 3181501..3182187(-) (comFC) [Bacillus altitudinis strain SCU11]
MICPICESHFVADFTWKSFLLLNEDRLCVACKNHLMKIQGPTCPKCGRAQSNDQLCQDCSRWNKRRDFAEILVMNRSVYA
YNNFMKDILARFKFRGDTALADLFKKDVQSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPILEPLIKVH
QRKQSKKRKNERLHQQNLFQLRQANPIVPNDIILIDDIYTTGATVYHAAKILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=355021 EQK04_RS16440 WP_026050153.1 3181501..3182187(-) (comFC) [Bacillus altitudinis strain SCU11]
TTGATTTGTCCAATTTGTGAGAGCCATTTTGTGGCTGATTTTACATGGAAATCATTCCTACTATTAAATGAAGATCGTTT
ATGTGTAGCATGTAAGAACCACCTGATGAAGATTCAAGGTCCTACTTGTCCCAAATGCGGAAGAGCGCAATCAAATGATC
AATTGTGTCAAGATTGTTCAAGGTGGAATAAACGACGGGATTTTGCTGAGATTCTTGTAATGAATCGGTCTGTTTATGCT
TACAACAACTTTATGAAAGATATTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTTAGCTGATCTATTTAAAAAAGA
TGTACAGTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTGCTTGTCCCAATTCCTTTGAGTAAAGAGAGATTAA
AGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTGGAGCCACTTATAAAAGTACAT
CAAAGGAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAATTTGTTCCAATTAAGGCAGGCAAACCCGAT
CGTTCCAAACGATATCATATTAATCGATGATATTTATACAACTGGGGCGACAGTCTATCATGCAGCAAAAATTTTAAAAG
AAGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50	100	0.504
comFC/cflB	Streptococcus mitis SK321	39.301	100	0.395
comFC/cflB	Streptococcus mitis NCTC 12261	38.428	100	0.386
comFC/cflB	Streptococcus pneumoniae TIGR4	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae Rx1	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae D39	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae R6	37.555	100	0.377