Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPY31_RS16745 Genome accession   NZ_CP046760
Coordinates   1678172..1679152 (+) Length   326 a.a.
NCBI ID   WP_042772851.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM51552     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1673172..1684152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY31_RS16725 - 1673529..1675139 (+) 1611 WP_053805738.1 peptide ABC transporter substrate-binding protein -
  GPY31_RS16730 oppB 1675306..1676226 (+) 921 WP_005454907.1 oligopeptide ABC transporter permease OppB -
  GPY31_RS16735 - 1676236..1677168 (+) 933 WP_017448602.1 ABC transporter permease subunit -
  GPY31_RS16740 - 1677179..1678162 (+) 984 WP_176092046.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  GPY31_RS16745 amiE 1678172..1679152 (+) 981 WP_042772851.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  GPY31_RS16750 - 1679162..1680958 (+) 1797 WP_083110742.1 aminopeptidase P family protein -
  GPY31_RS16760 - 1681211..1683655 (-) 2445 WP_158111820.1 collagenase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36310.13 Da        Isoelectric Point: 7.8596

>NTDB_id=355024 GPY31_RS16745 WP_042772851.1 1678172..1679152(+) (amiE) [Vibrio parahaemolyticus strain AM51552]
MNQKEVLLSARDLQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMLGFSKNKLARCRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide


Download         Length: 981 bp        

>NTDB_id=355024 GPY31_RS16745 WP_042772851.1 1678172..1679152(+) (amiE) [Vibrio parahaemolyticus strain AM51552]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGATCTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATAGAGGTGAAACGCTCGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCGCGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGTAAGCTCACTTGGAAAGGTGAA
GACATGCTTGGCTTCAGCAAAAACAAGTTAGCGCGTTGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAACCTCAACTCAAACGCGCCGAAG
TCGAAAAACGCGTCATTGCGATGATGGACAAAGTGGGTCTGCTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGCGCCTTAATCCTCAATCCGGACTTAGTGGTGTGTGATGAACCCGTCAG
CGCATTGGATGTTTCGATTCAAGCTCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCTCATGACCTAAGCGTTGTGCGCCATATCAGCGACCGAGTGATGGTGATGTACCTTGGCAAACCGATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAAGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCCTCTCCGCTCAACCCACCAAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCAGTCAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-305)

ABC transporter (ABC_tran)

(35-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.836

95.399

0.39
  amiE Streptococcus thermophilus LMD-9

40.836

95.399

0.39
  amiE Streptococcus salivarius strain HSISS4

39.744

95.706

0.38
  amiF Streptococcus salivarius strain HSISS4

45.091

84.356

0.38
  amiF Streptococcus thermophilus LMG 18311

45.055

83.742

0.377
  amiF Streptococcus thermophilus LMD-9

44.689

83.742

0.374
  oppD Streptococcus mutans UA159

38.339

96.012

0.368

Multiple sequence alignment