Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EQK04_RS16450 Genome accession   NZ_CP038517
Coordinates   3182542..3183921 (-) Length   459 a.a.
NCBI ID   WP_026050154.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SCU11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3177542..3188921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK04_RS16415 (EQK04_16505) flgL 3177725..3178636 (-) 912 WP_017368141.1 flagellar hook-associated protein FlgL -
  EQK04_RS16420 (EQK04_16510) flgK 3178645..3180165 (-) 1521 WP_017368142.1 flagellar hook-associated protein FlgK -
  EQK04_RS16425 (EQK04_16515) - 3180181..3180663 (-) 483 WP_008348261.1 flagellar protein FlgN -
  EQK04_RS16430 (EQK04_16520) flgM 3180682..3180945 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  EQK04_RS16435 (EQK04_16525) - 3181025..3181444 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  EQK04_RS16440 (EQK04_16530) comFC 3181501..3182187 (-) 687 WP_026050153.1 amidophosphoribosyltransferase Machinery gene
  EQK04_RS16445 (EQK04_16535) - 3182184..3182477 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  EQK04_RS16450 (EQK04_16540) comFA 3182542..3183921 (-) 1380 WP_026050154.1 DEAD/DEAH box helicase Machinery gene
  EQK04_RS16455 (EQK04_16545) - 3184041..3184883 (-) 843 WP_007499966.1 DegV family protein -
  EQK04_RS16460 (EQK04_16550) degU 3185095..3185784 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  EQK04_RS16465 (EQK04_16555) degS 3185849..3187024 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  EQK04_RS16470 (EQK04_16560) - 3187246..3187914 (+) 669 WP_008348276.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52504.06 Da        Isoelectric Point: 9.9737

>NTDB_id=355022 EQK04_RS16450 WP_026050154.1 3182542..3183921(-) (comFA) [Bacillus altitudinis strain SCU11]
MNLEKAMELSHKLQSRHLLPVECQCTQSELEWLENQGFIHRTPAVDRVASGLICCRCGVSNKRYFALSSCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKRLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=355022 EQK04_RS16450 WP_026050154.1 3182542..3183921(-) (comFA) [Bacillus altitudinis strain SCU11]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCACCTTCTTCCTGTTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTTATCCATAGAACACCTGCAGTCGATAGGGTGGCGAGTGGTTTGATCT
GCTGCCGGTGTGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTTCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACAAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAATAAAATATGCGTTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCACCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAAGATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAGATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGG
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGAT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTTCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTACTTTTTTCATTTTGGCTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.125

97.386

0.508

Multiple sequence alignment