Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   E3983_RS06395 Genome accession   NZ_CP038254
Coordinates   1410610..1412751 (+) Length   713 a.a.
NCBI ID   WP_135060294.1    Uniprot ID   A0AAX1EG13
Organism   Legionella israelensis strain HL-0427-4011     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1405610..1417751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3983_RS06370 (E3983_06370) - 1406564..1407568 (-) 1005 WP_135060292.1 hypothetical protein -
  E3983_RS06375 (E3983_06375) pilM 1407826..1408890 (+) 1065 WP_058501754.1 type IV pilus assembly protein PilM Machinery gene
  E3983_RS06380 (E3983_06380) pilN 1408894..1409466 (+) 573 WP_058501753.1 PilN domain-containing protein Machinery gene
  E3983_RS06385 (E3983_06385) pilO 1409478..1410077 (+) 600 WP_058501752.1 type 4a pilus biogenesis protein PilO Machinery gene
  E3983_RS06390 (E3983_06390) - 1410074..1410607 (+) 534 WP_135060293.1 pilus assembly protein PilP -
  E3983_RS06395 (E3983_06395) pilQ 1410610..1412751 (+) 2142 WP_135060294.1 type IV pilus secretin PilQ family protein Machinery gene
  E3983_RS06400 (E3983_06400) aroK 1412833..1413354 (+) 522 WP_172460999.1 shikimate kinase AroK -
  E3983_RS06405 (E3983_06405) aroB 1413341..1414447 (+) 1107 WP_135060295.1 3-dehydroquinate synthase -
  E3983_RS06410 (E3983_06410) - 1414451..1415869 (+) 1419 WP_135060296.1 AAA family ATPase -
  E3983_RS06415 (E3983_06415) - 1415900..1416331 (+) 432 WP_135060297.1 universal stress protein -
  E3983_RS06420 (E3983_06420) ribF 1416821..1417744 (+) 924 WP_135060298.1 bifunctional riboflavin kinase/FAD synthetase -

Sequence

Protein


Download         Length: 713 a.a.        Molecular weight: 79194.17 Da        Isoelectric Point: 9.7517

>NTDB_id=352774 E3983_RS06395 WP_135060294.1 1410610..1412751(+) (pilQ) [Legionella israelensis strain HL-0427-4011]
MRKIFAMLIVFLAGSGMVFSKSNDLIAVKARPLPDNRVRLDFHFSRPLSQLPASFVTEKPSRLVLDFLNAGTHMDEPSRS
KHIGIGSLKKYNIVSVGNRVRAVLDLSDFVSYSGNLVGNTYCLTLRGKGGLLFERNREIFVTNKPVNTRHTITHIGFRGA
DKKGGRVVIDLTDASVPIDVTKEGNEVIIDFHNTQIPQRLARRYDVTDFHSPAQILTARQYGKKTRVTVENKGYYDYYAY
QVNKQFIVDVFPLTEEEINQAKLKKKVFTGKKISLNFQNIPVRSVLQLLADFTGINMVVSDEVKGDITLRLNEVPWDQAL
DIILTTQGLDKRQRGNVMLIDTKARLEQREKAELESQKELQVLAPLRSELIQIKYAKAAEIATLLKDKETSLLTERGKVS
VDERTNTILIQETAVQIERIRELIAQLDVPVKQVLIEARIVNVTKDCTQDLGIRFGISRPTHLSGTLDGANQLAQGIDPA
DVTPLNRRLNVDLAALPVDANPASIGIALAKLGDNILLDLELSALESEGRAEIVASPRLMTTNQKSAIIESGEDIPYQEA
TSSGATAVAFKKAVLSLKVTPQITPDNKLVMELEINQDSDSGRRVQGVPIILTRSIETNVLVNNGQTIVLGGIYRRDKNN
SITRVPFLGELPVVGNLFRSRSTSVSNEELLIFITPKIITNALSITSIEGQQHVAHSRVELDKFGKPVRTYVK

Nucleotide


Download         Length: 2142 bp        

>NTDB_id=352774 E3983_RS06395 WP_135060294.1 1410610..1412751(+) (pilQ) [Legionella israelensis strain HL-0427-4011]
GTGCGTAAAATTTTCGCAATGTTGATTGTTTTTTTAGCCGGTTCAGGGATGGTGTTTTCTAAATCCAATGATCTTATTGC
CGTCAAGGCCAGACCTTTACCTGATAATCGTGTGCGTCTTGATTTTCATTTTTCTCGCCCATTAAGCCAGCTTCCGGCAA
GCTTTGTGACAGAGAAACCTTCCCGGTTAGTGCTTGACTTTCTGAACGCAGGTACCCATATGGATGAGCCATCCAGAAGC
AAACACATCGGTATAGGCTCTTTGAAAAAATATAATATTGTTTCGGTTGGAAATCGTGTAAGAGCGGTTTTAGACTTATC
GGATTTTGTATCTTATTCTGGAAACCTGGTTGGTAATACTTATTGCCTGACATTACGGGGTAAAGGTGGACTGTTATTTG
AAAGAAATAGAGAAATTTTCGTTACCAATAAGCCGGTTAATACACGCCATACTATTACTCATATCGGTTTTCGTGGCGCA
GATAAAAAGGGCGGTAGAGTTGTGATCGATCTGACAGATGCCAGTGTGCCCATTGACGTAACGAAAGAAGGCAATGAAGT
GATCATTGATTTTCATAATACCCAAATCCCCCAACGATTGGCAAGGCGTTACGATGTCACCGATTTTCACAGTCCAGCAC
AAATACTGACAGCAAGGCAATATGGTAAAAAAACACGAGTAACCGTAGAAAATAAAGGATATTATGACTATTATGCCTAC
CAGGTTAACAAACAGTTTATTGTAGATGTTTTTCCATTGACGGAGGAAGAGATAAACCAGGCCAAATTAAAGAAAAAGGT
GTTTACCGGCAAGAAAATTTCCTTGAATTTTCAGAACATTCCAGTTCGTTCCGTTCTTCAGTTGCTGGCTGATTTTACCG
GCATTAACATGGTGGTTAGCGATGAAGTTAAGGGTGATATTACGTTAAGATTGAATGAAGTACCCTGGGATCAGGCACTC
GATATTATTTTGACGACACAGGGGCTGGATAAACGCCAAAGAGGCAATGTAATGTTGATTGACACCAAAGCCAGGCTTGA
GCAAAGAGAAAAGGCGGAGTTGGAGAGCCAGAAAGAATTGCAGGTATTAGCCCCGCTTCGTTCAGAACTGATTCAAATTA
AGTATGCAAAAGCGGCCGAGATTGCCACTTTATTAAAGGATAAAGAGACTTCTTTGCTTACTGAAAGAGGTAAGGTAAGT
GTTGACGAGCGAACCAATACGATTTTAATTCAGGAGACGGCTGTTCAGATTGAACGTATTCGCGAGCTAATTGCTCAGCT
GGATGTCCCCGTTAAGCAGGTTTTGATTGAAGCTCGGATTGTTAATGTCACTAAAGACTGTACCCAGGATTTGGGCATTC
GCTTTGGCATATCCAGGCCGACCCATTTAAGCGGTACACTGGATGGCGCTAACCAGCTAGCTCAGGGCATCGATCCTGCT
GATGTAACGCCACTTAATCGTCGTTTGAATGTTGATCTGGCCGCCTTGCCAGTCGATGCTAATCCGGCATCCATTGGTAT
CGCGCTTGCTAAATTAGGTGATAATATTTTACTGGATCTGGAATTGTCAGCCCTGGAAAGTGAGGGAAGGGCTGAAATTG
TTGCCAGTCCTCGATTAATGACGACTAACCAGAAGTCGGCTATTATTGAATCAGGGGAAGATATTCCCTATCAGGAAGCA
ACTTCCAGTGGTGCTACAGCAGTCGCATTTAAGAAAGCTGTGTTAAGCTTAAAAGTGACGCCACAAATTACTCCGGATAA
TAAACTGGTGATGGAACTTGAAATAAACCAGGATTCAGATTCCGGGCGGCGAGTTCAGGGTGTACCTATTATTTTGACTC
GTTCAATCGAAACGAATGTGTTGGTTAATAACGGACAGACCATTGTTCTTGGCGGTATTTATAGGAGAGACAAGAATAAC
TCGATTACACGCGTTCCGTTCTTGGGCGAATTGCCTGTAGTGGGTAATTTATTCAGGAGCCGATCAACTTCTGTCTCTAA
TGAGGAGTTGCTCATTTTCATTACTCCTAAGATAATTACCAACGCTCTGTCAATTACCAGTATTGAAGGGCAGCAACATG
TGGCTCACAGCCGCGTAGAACTGGATAAATTTGGAAAGCCGGTGAGAACCTATGTAAAATAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(524-679)

Bacterial type II/III secretion system short domain (Secretin_N)

(369-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Legionella pneumophila strain Lp02

67.388

97.195

0.655
  pilQ Legionella pneumophila strain ERS1305867

67.244

97.195

0.654
  pilQ Acinetobacter baumannii strain A118

37.717

97.055

0.366
  pilQ Acinetobacter baumannii D1279779

37.717

97.055

0.366
  pilQ Pseudomonas aeruginosa PAK

37.901

96.213

0.365
  comQ Acinetobacter baylyi ADP1

38.257

94.951

0.363

Multiple sequence alignment