Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   ES300_RS04385 Genome accession   NZ_CP038251
Coordinates   871982..872632 (+) Length   216 a.a.
NCBI ID   WP_001864147.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901944     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 866982..877632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES300_RS04355 (ES300_04585) - 867466..867681 (+) 216 WP_001232081.1 YozE family protein -
  ES300_RS04360 (ES300_04590) - 867767..868735 (+) 969 WP_000658183.1 PhoH family protein -
  ES300_RS04365 (ES300_04600) - 868928..869428 (+) 501 WP_054363455.1 GNAT family N-acetyltransferase -
  ES300_RS04370 (ES300_04605) - 869431..869756 (+) 326 Protein_881 TfoX/Sxy family protein -
  ES300_RS04375 ald 870057..871168 (-) 1112 Protein_882 alanine dehydrogenase -
  ES300_RS04380 (ES300_04625) - 871345..871914 (+) 570 WP_001864145.1 GNAT family N-acetyltransferase -
  ES300_RS04385 (ES300_04630) comEA/celA/cilE 871982..872632 (+) 651 WP_001864147.1 helix-hairpin-helix domain-containing protein Machinery gene
  ES300_RS04390 (ES300_04635) comEC/celB 872616..874856 (+) 2241 WP_054363457.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ES300_RS04395 (ES300_04640) - 874998..875222 (+) 225 WP_001813351.1 hypothetical protein -
  ES300_RS04400 (ES300_04645) - 875254..875841 (+) 588 WP_050208333.1 ATP-binding cassette domain-containing protein -
  ES300_RS04405 (ES300_04650) - 875845..877026 (+) 1182 WP_054363459.1 hypothetical protein -

Sequence


Protein


Download         Length: 216 a.a.        Molecular weight: 23205.54 Da        Isoelectric Point: 5.5171

>NTDB_id=352537 ES300_RS04385 WP_001864147.1 871982..872632(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain TVO_1901944]
MEAIIEKIKEYKIIVICTGLGLLVGGFFLLKPAPQTPVKETNLQVEVAAVSKDLVSEKEVNKEEKEEPVEQDLITVDVKG
AVKSPGIYDLPVGSRVNDAVQKAGGLTEQADSKSLNLAQKVSDEALVYVPTKGEEAVSQQTGSGTASSTSKEKKVNLNKA
SLEELKQVKGLGGKRAQDIIDHREANGKFKSVDELKKVSGIGGKTIEKLKDYVTVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=352537 ES300_RS04385 WP_001864147.1 871982..872632(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain TVO_1901944]
ATGGAAGCAATTATCGAGAAAATCAAAGAGTATAAAATCATCGTCATCTGTACTGGTCTGGGCTTGCTTGTAGGCGGATT
TTTCCTGCTAAAGCCAGCTCCACAAACACCTGTCAAAGAAACGAATTTGCAGGTTGAAGTTGCAGCTGTTTCCAAGGATT
TGGTATCCGAAAAGGAAGTGAACAAGGAAGAGAAGGAAGAACCAGTTGAACAAGATCTAATCACAGTAGATGTCAAAGGT
GCTGTCAAATCGCCAGGGATTTATGACTTGCCTGTAGGTAGTCGAGTCAATGATGCTGTTCAGAAGGCTGGTGGCTTGAC
AGAGCAAGCAGACAGCAAGTCGCTCAATCTAGCTCAGAAAGTTAGTGATGAGGCTCTGGTTTACGTTCCTACTAAGGGAG
AAGAAGCAGTTAGTCAACAGACTGGTTCGGGGACAGCTTCTTCAACAAGCAAGGAAAAGAAGGTCAATCTCAACAAGGCC
AGTCTGGAAGAACTCAAGCAGGTCAAGGGACTGGGAGGAAAACGAGCTCAGGACATTATCGACCATCGTGAGGCAAATGG
CAAGTTCAAGTCAGTAGACGAGCTCAAGAAGGTCTCTGGCATTGGTGGCAAAACAATAGAAAAGCTTAAAGACTATGTTA
CAGTGGATTAA

Domains


Predicted by InterproScan.

(151-214)

(76-126)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae Rx1

98.148

100

0.981

  comEA/celA/cilE Streptococcus pneumoniae D39

98.148

100

0.981

  comEA/celA/cilE Streptococcus pneumoniae R6

98.148

100

0.981

  comEA/celA/cilE Streptococcus pneumoniae TIGR4

97.222

100

0.972

  comEA/celA/cilE Streptococcus mitis NCTC 12261

95.833

100

0.958

  comEA/celA/cilE Streptococcus mitis SK321

91.204

100

0.912

  comEA Lactococcus lactis subsp. cremoris KW2

43.612

100

0.458

  comEA Latilactobacillus sakei subsp. sakei 23K

33.906

100

0.366

  comEA Bacillus subtilis subsp. subtilis str. 168

41.579

87.963

0.366


Multiple sequence alignment