NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	GNT62_RS14195	Genome accession	NZ_CP046406
Coordinates	2931066..2931707 (+)	Length	213 a.a.
NCBI ID	WP_003087922.1	Uniprot ID	-
Organism	Pseudomonas aeruginosa strain SE5458
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2926066..2936707

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GNT62_RS14180 (GNT62_14140)	parS	2927436..2928722 (-)	1287	WP_003087912.1	sensor histidine kinase ParS	-
GNT62_RS14185 (GNT62_14145)	parR	2928723..2929430 (-)	708	WP_003087915.1	response regulator transcription factor ParR	-
GNT62_RS14190 (GNT62_14150)	tig	2929662..2930972 (+)	1311	WP_003087920.1	trigger factor	-
GNT62_RS14195 (GNT62_14155)	clpP	2931066..2931707 (+)	642	WP_003087922.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
GNT62_RS14200 (GNT62_14160)	clpX	2931812..2933092 (+)	1281	WP_003087924.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
GNT62_RS14205 (GNT62_14165)	lon	2933224..2935620 (+)	2397	WP_003087926.1	endopeptidase La	-
GNT62_RS14210 (GNT62_14170)	hupB	2935756..2936028 (+)	273	WP_003087931.1	nucleoid-associated protein HU-beta	-

Sequence

Protein

Download Length: 213 a.a. Molecular weight: 23601.27 Da Isoelectric Point: 6.6019

                                >NTDB_id=352062 GNT62_RS14195 WP_003087922.1 2931066..2931707(+) (clpP) [Pseudomonas aeruginosa strain SE5458]

MSRNSFIPHVPDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYI

NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEIL

FIKERLNQILAHHTRQPLDVIARDTDRDRFMSGDEAVKYGLIDKVMTQRDLAV

Nucleotide

Download Length: 642 bp

                                >NTDB_id=352062 GNT62_RS14195 WP_003087922.1 2931066..2931707(+) (clpP) [Pseudomonas aeruginosa strain SE5458]

ATGTCTCGCAACTCTTTTATTCCGCACGTTCCCGATATCCAGGCCGCCGGTGGCCTGGTGCCCATGGTGGTGGAGCAGTC

CGCCCGCGGCGAGCGCGCCTACGACATCTATTCGCGCCTGCTGAAGGAGCGGATCATCTTCCTGGTCGGCCAGGTCGAGG

ACTACATGGCCAACCTGGTGGTTGCCCAGTTGCTGTTCCTGGAGGCTGAAAATCCCGAGAAGGACATTCATCTCTACATC

AACTCGCCGGGTGGCTCGGTGACTGCCGGGATGTCCATCTACGACACCATGCAGTTCATCAAGCCCAACGTCTCGACCAC

CTGTATCGGTCAGGCGTGCAGCATGGGTGCCCTGCTGCTTGCGGGCGGTGCCGCCGGCAAGCGCTACTGCCTGCCGCATT

CGCGGATGATGATCCACCAGCCGCTGGGCGGTTTCCAGGGCCAGGCCTCGGATATCGAGATCCATGCCAAGGAAATCCTC

TTCATCAAGGAGCGTCTGAACCAGATCCTGGCGCACCACACCCGCCAGCCCCTGGACGTCATTGCCCGCGATACCGATCG

TGACCGCTTTATGAGCGGTGACGAAGCCGTCAAGTATGGCCTGATCGACAAGGTCATGACCCAGCGCGACCTGGCCGTCT

AA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.188	90.141	0.606
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.789	89.202	0.587
clpP	Lactococcus lactis subsp. cremoris KW2	53.299	92.488	0.493
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.777	92.488	0.479
clpP	Streptococcus mutans UA159	50	92.019	0.46
clpP	Streptococcus pneumoniae R6	50.256	91.549	0.46
clpP	Streptococcus pneumoniae TIGR4	50.256	91.549	0.46
clpP	Streptococcus pyogenes JRS4	50.256	91.549	0.46
clpP	Streptococcus pyogenes MGAS315	50.256	91.549	0.46
clpP	Streptococcus thermophilus LMG 18311	50.256	91.549	0.46
clpP	Streptococcus thermophilus LMD-9	50.256	91.549	0.46
clpP	Streptococcus pneumoniae Rx1	50.256	91.549	0.46
clpP	Streptococcus pneumoniae D39	50.256	91.549	0.46

Detailed information NTG0352062