NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	GJ664_RS06655	Genome accession	NZ_CP046037
Coordinates	1348266..1348850 (-)	Length	194 a.a.
NCBI ID	WP_025016311.1	Uniprot ID	-
Organism	Latilactobacillus sakei strain CBA3614
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1343266..1353850

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJ664_RS06625 (GJ664_06625)	-	1343331..1343867 (+)	537	WP_016264747.1	DUF308 domain-containing protein	-
GJ664_RS06630 (GJ664_06630)	rapZ	1343993..1344877 (+)	885	WP_011374234.1	RNase adapter RapZ	-
GJ664_RS06635 (GJ664_06635)	-	1344874..1345908 (+)	1035	WP_016264749.1	gluconeogenesis factor YvcK family protein	-
GJ664_RS06640 (GJ664_06640)	whiA	1345911..1346855 (+)	945	WP_094365657.1	DNA-binding protein WhiA	-
GJ664_RS06645 (GJ664_06645)	-	1346947..1347402 (+)	456	WP_035146456.1	MarR family winged helix-turn-helix transcriptional regulator	-
GJ664_RS06650 (GJ664_06650)	-	1347517..1348041 (-)	525	WP_035146459.1	DsbA family protein	-
GJ664_RS06655 (GJ664_06655)	clpP	1348266..1348850 (-)	585	WP_025016311.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
GJ664_RS06660 (GJ664_06660)	-	1349394..1349975 (-)	582	WP_025016310.1	glycoside hydrolase family 73 protein	-
GJ664_RS06665 (GJ664_06665)	-	1350190..1351149 (+)	960	WP_025016309.1	nucleoside hydrolase	-
GJ664_RS06670 (GJ664_06670)	-	1351339..1353288 (+)	1950	WP_035146461.1	adhesive domain-containing protein	-

Sequence

Protein

Download Length: 194 a.a. Molecular weight: 21244.27 Da Isoelectric Point: 4.6805

                                >NTDB_id=349713 GJ664_RS06655 WP_025016311.1 1348266..1348850(-) (clpP) [Latilactobacillus sakei strain CBA3614]

MLVPTVIEQTSRGERAYDIYSRLLKDRIIMLSGEVNDQMANTIIAQLLFLDAQDSDKDISIYINSPGGSVTAGLAIMDTM

NFIKSDVQTIAMGMAASMASVLLSAGTKGKRFALPNSTVLIHQPLGGAQGQQTEIEIAAREILKTRKRLNQILADNSGQS

FEKLQADTDRDNYMTAQEAKDYGLIDDIMVNQPK

Nucleotide

Download Length: 585 bp

                                >NTDB_id=349713 GJ664_RS06655 WP_025016311.1 1348266..1348850(-) (clpP) [Latilactobacillus sakei strain CBA3614]

ATGTTAGTACCGACAGTTATCGAACAAACATCTCGTGGCGAACGCGCCTACGATATTTACTCTCGTTTACTAAAAGACCG

GATCATCATGTTATCTGGTGAAGTGAACGACCAAATGGCTAACACAATCATTGCGCAATTACTATTCTTGGATGCGCAAG

ATTCAGATAAGGATATTTCAATCTACATCAACTCACCTGGTGGTTCTGTGACAGCCGGTTTGGCAATCATGGATACAATG

AACTTCATTAAATCTGATGTTCAAACAATCGCTATGGGCATGGCTGCTTCAATGGCCAGCGTTTTACTTTCAGCTGGGAC

AAAAGGCAAACGTTTTGCATTGCCTAACTCAACAGTCTTAATTCACCAACCTTTAGGCGGTGCACAAGGCCAACAAACTG

AAATTGAAATCGCTGCTCGCGAAATTTTGAAGACTCGGAAACGTTTGAACCAAATCTTGGCAGACAATTCTGGTCAAAGC

TTCGAAAAATTACAAGCAGACACTGATCGTGATAACTACATGACAGCCCAAGAAGCAAAAGATTACGGTTTGATTGACGA

CATTATGGTTAACCAACCAAAATAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(12-191)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Lactococcus lactis subsp. cremoris KW2	71.354	98.969	0.706
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	69.271	98.969	0.686
clpP	Streptococcus pneumoniae D39	68.229	98.969	0.675
clpP	Streptococcus pneumoniae R6	68.229	98.969	0.675
clpP	Streptococcus pneumoniae TIGR4	68.229	98.969	0.675
clpP	Streptococcus thermophilus LMD-9	68.229	98.969	0.675
clpP	Streptococcus thermophilus LMG 18311	68.229	98.969	0.675
clpP	Streptococcus pneumoniae Rx1	68.229	98.969	0.675
clpP	Bacillus subtilis subsp. subtilis str. 168	66.842	97.938	0.655
clpP	Streptococcus mutans UA159	65.625	98.969	0.649
clpP	Streptococcus pyogenes JRS4	64.583	98.969	0.639
clpP	Streptococcus pyogenes MGAS315	64.583	98.969	0.639
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.021	97.423	0.624

Detailed information NTG0349713