Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GJD95_RS23610 Genome accession   NZ_CP046006
Coordinates   4643854..4645314 (+) Length   486 a.a.
NCBI ID   WP_097433307.1    Uniprot ID   -
Organism   Escherichia coli strain 1919D3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4638854..4650314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD95_RS23585 (GJD95_23585) ilvE 4640408..4641337 (-) 930 WP_000208520.1 branched-chain-amino-acid transaminase -
  GJD95_RS23590 (GJD95_23590) ilvM 4641357..4641620 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  GJD95_RS23595 (GJD95_23595) ilvG 4641617..4643263 (-) 1647 WP_001012619.1 acetolactate synthase 2 catalytic subunit -
  GJD95_RS23600 (GJD95_23600) ilvX 4643266..4643316 (-) 51 WP_001387183.1 peptide IlvX -
  GJD95_RS23605 (GJD95_23605) ilvL 4643403..4643501 (-) 99 WP_001311244.1 ilv operon leader peptide -
  GJD95_RS23610 (GJD95_23610) comM 4643854..4645314 (+) 1461 WP_097433307.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GJD95_RS23615 (GJD95_23615) maoP 4645399..4645737 (-) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  GJD95_RS23620 (GJD95_23620) hdfR 4645856..4646695 (+) 840 WP_000379246.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 486 a.a.        Molecular weight: 52797.54 Da        Isoelectric Point: 7.3628

>NTDB_id=349499 GJD95_RS23610 WP_097433307.1 4643854..4645314(+) (comM) [Escherichia coli strain 1919D3]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKHALERPKPTDAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPG
ESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEGTLIHLGLSIRAWQRLLKVARTIADIDQSDII
TRQHLQ

Nucleotide


Download         Length: 1461 bp        

>NTDB_id=349499 GJD95_RS23610 WP_097433307.1 4643854..4645314(+) (comM) [Escherichia coli strain 1919D3]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGATGGTGGGCTTACCAGAAACAACTGTAAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTGGCTCCAGCCGATCTGCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
CGGAGAACTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGCGCAATCTCCAGTGCAACTGAAGCTATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGTGCGTTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGGCACAACCTTT
TACTGATTGGGCCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGCGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCGCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAATTCCAGGGCCAGGTGAAATTTCGTTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACACGAGCCAAAATAACCTATCCAGCCCGTTTCCAGCTTGTTGCGGCGATGAATCCCAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACGCCAGAACAGACATTACGTTATCTCAACCGGCTCTCGGGGC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCATTACCACCCCCCGGCATTTTGAGTAAAACGGTAGTGCCGGGA
GAAAGCAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCTG
GCTGGATAGTCCGGAAATACGCCAATTCTGCAAACTTGAGAGCGAAGATGCGATGTGGTTGGAAGGAACACTGATCCATC
TGGGGTTATCGATTCGTGCCTGGCAGCGGTTATTGAAAGTTGCACGAACCATTGCTGATATTGATCAGTCTGACATTATC
ACACGTCAGCATTTGCAGTAG

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-485)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.146

100

0.599
  comM Vibrio cholerae O1 biovar El Tor strain E7946

59.259

100

0.593
  comM Vibrio cholerae strain A1552

59.259

100

0.593
  comM Glaesserella parasuis strain SC1401

58.367

100

0.588
  comM Vibrio campbellii strain DS40M4

58.025

100

0.58
  comM Acinetobacter baylyi ADP1

48.776

100

0.492
  comM Legionella pneumophila str. Paris

47.967

100

0.486
  comM Legionella pneumophila strain ERS1305867

47.967

100

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.04

100

0.449
  comM Helicobacter pylori 26695

36.14

100

0.362