Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   TERTU_RS15870 Genome accession   NC_012997
Coordinates   3967870..3970053 (-) Length   727 a.a.
NCBI ID   WP_015820035.1    Uniprot ID   C5BRJ9
Organism   Teredinibacter turnerae T7901     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3962870..3975053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TERTU_RS15855 (TERTU_3578) - 3964630..3966093 (-) 1464 WP_015819059.1 SPOR domain-containing protein -
  TERTU_RS15860 (TERTU_3579) aroB 3966195..3967280 (-) 1086 WP_015817408.1 3-dehydroquinate synthase -
  TERTU_RS15865 (TERTU_3580) aroK 3967358..3967867 (-) 510 WP_015817934.1 shikimate kinase AroK -
  TERTU_RS15870 (TERTU_3581) pilQ 3967870..3970053 (-) 2184 WP_015820035.1 type IV pilus secretin PilQ Machinery gene
  TERTU_RS15875 (TERTU_3582) - 3970058..3970588 (-) 531 WP_015819582.1 pilus assembly protein PilP -
  TERTU_RS15880 (TERTU_3583) - 3970588..3971211 (-) 624 WP_015818615.1 type 4a pilus biogenesis protein PilO -
  TERTU_RS15885 (TERTU_3584) - 3971213..3971773 (-) 561 WP_015818174.1 PilN domain-containing protein -
  TERTU_RS15890 (TERTU_3585) pilM 3971775..3972842 (-) 1068 WP_015817639.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 727 a.a.        Molecular weight: 78830.96 Da        Isoelectric Point: 4.3502

>NTDB_id=34917 TERTU_RS15870 WP_015820035.1 3967870..3970053(-) (pilQ) [Teredinibacter turnerae T7901]
MLANKVRILLAVALLSMCNLAGASSLNDISFSELPGERAELRLKFGGDVVAPQSYTIDQPARIVLDFVDVDNALSQKKYN
MSVGEVASAVIVAGGGRTRMIVNLNKLVPFVSRVEGNELVLEVGEESTGIGYAPRSEVADLGVVEQSSPAEVSGASVIRN
IDFRRGETGEGKVIITLSNPNISIDVQENSKGITVRFVETKIPMEMRRKLDVVDFATPVSIVSSSMEGSTALMEIEASGD
YDYLAYQADNEYVLSVKPLTSQEIAEKKKAFAYTGERLSLNFQDIQVRSVLQLIADFTELNLVASDTVSGSITLRLENVP
WDQALDLVLKTKGLDKRQVGNVLMVAPAAEIAEREKQEIETKKQLQELAPLRTEYIRIRYANARELFNLFSDSSAGGEGG
GTGGGGAAGGSNERNSTGSILSERGQAIVDERTNSIILTDTEEKIDQFKQLIDRIDIPVRQVMIEARIVVANSDFRKELG
FRIAGDAVESSKSGSHIHEFTGSLDSVYADETSITGAFVDSDGDGTADRAHTFPQNSFVDLGVFNPTGSLAWNVISNNFM
IGMELSALQDSGFAEIVSQPKVITGDKQQASIQSGTSVPFQEESASGGTTISFKDVVLRLDVTPQITPDNRIIMDLEILQ
DSVTGYESGVPIIDITHLDTSVLVADGDTVVLGGIYATEQRKGQSKVPLLGDIPLLGRLFRYDISQEDKRELLIFITPRI
MNSDFVE

Nucleotide


Download         Length: 2184 bp        

>NTDB_id=34917 TERTU_RS15870 WP_015820035.1 3967870..3970053(-) (pilQ) [Teredinibacter turnerae T7901]
ATGTTAGCTAATAAAGTAAGAATTCTGCTCGCCGTTGCGCTGCTGTCGATGTGCAACCTGGCTGGAGCGAGCAGCTTGAA
TGATATTTCTTTTTCGGAGCTGCCCGGGGAGCGCGCAGAACTGAGACTTAAATTCGGTGGTGATGTAGTAGCGCCACAAA
GTTACACCATCGATCAGCCTGCACGTATCGTGTTGGATTTTGTTGATGTGGACAATGCTCTGAGTCAGAAAAAATACAAC
ATGTCAGTGGGTGAAGTGGCCAGCGCAGTTATCGTTGCCGGTGGCGGCCGCACCCGAATGATCGTGAACCTGAATAAATT
AGTGCCATTTGTTTCTCGTGTTGAAGGCAATGAGCTGGTGTTGGAGGTTGGTGAGGAGTCAACTGGTATCGGCTATGCCC
CGCGCAGTGAAGTGGCGGATTTGGGGGTTGTTGAACAATCCAGCCCGGCCGAAGTTTCGGGGGCTTCAGTTATTCGCAAT
ATTGATTTTCGTCGCGGCGAGACGGGTGAGGGTAAGGTAATCATTACTTTATCTAATCCCAACATCAGTATTGATGTTCA
AGAAAACTCCAAGGGCATAACGGTGCGCTTTGTCGAAACCAAAATCCCAATGGAAATGCGACGCAAACTGGATGTGGTTG
ACTTTGCGACTCCGGTCAGCATCGTGTCTTCTTCGATGGAAGGCAGCACTGCACTCATGGAAATCGAAGCGTCCGGTGAC
TACGACTATCTGGCGTACCAGGCGGACAACGAGTACGTGCTCAGTGTAAAACCTTTAACCTCGCAAGAAATCGCCGAGAA
GAAAAAGGCCTTTGCTTACACTGGAGAACGCTTGTCGCTCAATTTCCAAGACATTCAGGTGCGCTCTGTCCTGCAGTTAA
TTGCAGACTTCACTGAGCTGAACCTGGTTGCCAGCGATACCGTCTCAGGCAGTATCACACTGCGGTTGGAGAATGTGCCC
TGGGATCAGGCGCTGGATCTGGTTCTGAAGACTAAAGGGCTGGACAAGCGCCAGGTAGGCAATGTGTTGATGGTTGCCCC
GGCCGCTGAAATCGCTGAACGTGAAAAGCAGGAAATCGAAACCAAGAAGCAACTACAGGAGCTGGCGCCACTGCGCACCG
AATATATTCGGATCCGTTACGCGAACGCCCGTGAACTGTTTAACCTGTTTTCCGATAGCAGTGCTGGTGGCGAAGGTGGT
GGCACCGGCGGTGGTGGTGCAGCAGGTGGTAGTAACGAGCGCAATTCGACCGGCAGCATCCTTTCCGAGCGCGGCCAGGC
GATTGTGGACGAGCGTACCAACTCCATTATTCTTACCGATACCGAAGAAAAAATTGATCAGTTCAAGCAATTGATCGACC
GTATTGACATACCTGTACGACAGGTAATGATCGAAGCCCGTATTGTGGTCGCGAATTCAGACTTCCGCAAAGAGCTGGGT
TTTAGAATTGCTGGCGATGCGGTGGAGTCAAGTAAGTCTGGTAGTCATATTCATGAATTTACCGGCTCGCTGGACAGTGT
TTATGCGGATGAAACCAGTATCACTGGTGCTTTCGTGGATTCTGACGGCGATGGTACCGCCGATCGGGCACACACCTTCC
CGCAAAACTCTTTTGTCGATCTTGGTGTGTTCAATCCGACAGGCTCTCTGGCGTGGAACGTGATCAGTAATAATTTCATG
ATCGGCATGGAGCTGTCTGCGCTACAGGATTCCGGTTTTGCAGAGATTGTTTCGCAGCCCAAAGTGATCACTGGCGATAA
GCAGCAGGCGTCTATCCAGTCTGGTACATCTGTGCCATTCCAAGAAGAGTCGGCAAGCGGCGGCACTACAATCTCATTTA
AAGATGTTGTGTTGCGTCTGGATGTGACCCCCCAGATTACGCCTGACAACCGTATTATTATGGATCTGGAAATTCTTCAG
GACTCTGTGACCGGTTATGAATCCGGTGTCCCAATTATCGATATTACCCACCTGGATACTTCAGTCCTGGTTGCGGATGG
CGATACGGTGGTTCTTGGGGGTATTTATGCGACCGAGCAGCGCAAAGGGCAATCGAAAGTGCCTTTGCTCGGCGATATTC
CCTTGCTGGGCCGACTCTTCCGCTACGATATTAGTCAGGAAGATAAGCGCGAGCTGTTGATATTTATCACTCCTCGCATC
ATGAATTCAGATTTCGTCGAATAG

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(40-122)

Bacterial type II/III secretion system short domain (Secretin_N)

(374-461)

Bacterial type II and III secretion system protein (Secretin)

(567-721)

Secretin and TonB N terminus short domain (STN)

(301-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C5BRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

46.846

100

0.48
  pilQ Acinetobacter baumannii D1279779

41.45

100

0.417
  pilQ Acinetobacter baumannii strain A118

41.45

100

0.417
  comQ Acinetobacter baylyi ADP1

41.477

96.836

0.402
  pilQ Legionella pneumophila strain ERS1305867

37.027

98.074

0.363
  pilQ Legionella pneumophila strain Lp02

37.027

98.074

0.363

Multiple sequence alignment