Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   TERTU_RS15890 Genome accession   NC_012997
Coordinates   3971775..3972842 (-) Length   355 a.a.
NCBI ID   WP_015817639.1    Uniprot ID   C5BRK3
Organism   Teredinibacter turnerae T7901     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3966775..3977842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TERTU_RS15865 (TERTU_3580) aroK 3967358..3967867 (-) 510 WP_015817934.1 shikimate kinase AroK -
  TERTU_RS15870 (TERTU_3581) pilQ 3967870..3970053 (-) 2184 WP_015820035.1 type IV pilus secretin PilQ Machinery gene
  TERTU_RS15875 (TERTU_3582) - 3970058..3970588 (-) 531 WP_015819582.1 pilus assembly protein PilP -
  TERTU_RS15880 (TERTU_3583) - 3970588..3971211 (-) 624 WP_015818615.1 type 4a pilus biogenesis protein PilO -
  TERTU_RS15885 (TERTU_3584) - 3971213..3971773 (-) 561 WP_015818174.1 PilN domain-containing protein -
  TERTU_RS15890 (TERTU_3585) pilM 3971775..3972842 (-) 1068 WP_015817639.1 pilus assembly protein PilM Machinery gene
  TERTU_RS15895 (TERTU_3586) - 3972997..3975561 (+) 2565 WP_143876292.1 penicillin-binding protein 1A -
  TERTU_RS15900 (TERTU_3587) rpmE 3975723..3975932 (+) 210 WP_015820904.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38257.47 Da        Isoelectric Point: 4.2535

>NTDB_id=34918 TERTU_RS15890 WP_015817639.1 3971775..3972842(-) (pilM) [Teredinibacter turnerae T7901]
MGILSLFDKKKNPVLGLDVSSTTVKLLEFSQQGNGYRVENYAVRALPPNAVVEKNINDVEAVAQAIKAVVQSSRTKVKDC
AVAVPGSSVITKVIEMPGDLGEEALESQISLEADQYIPYPLEEVAIDFDVLGPSAKNPDQVEVLLAACRRENVDIRASVL
ELADLRAKVVDVEAYTMERAFGLIQEQLEDQEEQVVAILDIGATMTTLSVLVDGKTIYTREQLFGGKQLTEEIQRRYGLS
AEEAGLAKKQGGLPDDYEPEVLEPFKDAVVQQVTRSLQFFFSSSQYNDVDHIVLAGGVASLSGLAGLIEEKLGTSATVAN
PFANMSVSSRVNATALSNDAPSLMIATGLAMRGFV

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=34918 TERTU_RS15890 WP_015817639.1 3971775..3972842(-) (pilM) [Teredinibacter turnerae T7901]
ATGGGCATTCTCAGTTTGTTCGACAAAAAAAAGAATCCCGTACTCGGCTTAGATGTGAGTTCGACAACAGTTAAGTTGTT
AGAGTTCAGTCAGCAAGGTAACGGCTATAGGGTCGAGAACTATGCTGTGCGTGCTCTGCCACCCAATGCAGTAGTCGAAA
AAAACATCAATGACGTTGAGGCGGTCGCCCAGGCTATCAAAGCTGTGGTGCAATCGTCGCGGACCAAAGTCAAAGATTGT
GCCGTTGCTGTTCCAGGTTCCTCTGTTATTACTAAAGTGATTGAAATGCCCGGAGATTTGGGAGAAGAAGCGCTGGAGTC
GCAAATCTCTCTCGAGGCAGATCAGTACATTCCTTACCCGCTCGAGGAAGTCGCGATCGACTTTGACGTGTTGGGGCCTT
CCGCTAAAAATCCAGACCAGGTCGAAGTATTGCTTGCAGCTTGTCGGCGTGAAAACGTTGATATACGAGCGTCTGTTCTT
GAACTAGCTGACTTACGCGCCAAAGTGGTTGACGTGGAAGCCTACACCATGGAACGCGCGTTCGGGCTCATTCAGGAGCA
GCTGGAGGATCAGGAAGAGCAGGTGGTGGCGATTTTAGATATTGGCGCCACTATGACCACCCTGAGTGTGTTGGTGGATG
GCAAGACTATTTATACGCGCGAGCAGTTGTTTGGCGGTAAGCAGCTAACTGAAGAAATTCAGCGCCGCTATGGTTTGTCC
GCGGAAGAAGCGGGTCTGGCGAAAAAGCAGGGCGGTTTGCCCGATGATTACGAGCCGGAAGTGCTCGAGCCTTTTAAAGA
TGCCGTCGTTCAGCAGGTAACACGTTCGTTGCAATTCTTCTTCTCATCCAGCCAATACAACGATGTCGACCACATTGTTC
TCGCTGGGGGGGTGGCTTCTCTCTCCGGCTTGGCCGGTTTAATTGAAGAAAAGCTGGGCACATCTGCGACAGTCGCAAAT
CCGTTTGCGAATATGTCGGTTTCATCGCGGGTAAATGCAACCGCGCTTTCAAACGACGCGCCTTCGCTGATGATTGCAAC
GGGGCTGGCTATGAGGGGCTTTGTGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(16-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C5BRK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

55.398

99.155

0.549
  comM Acinetobacter nosocomialis M2

55.398

99.155

0.549
  comM Acinetobacter baylyi ADP1

53.409

99.155

0.53
  pilM Legionella pneumophila strain ERS1305867

45.869

98.873

0.454

Multiple sequence alignment