Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | GJD98_RS06355 | Genome accession | NZ_CP045974 |
| Coordinates | 1386163..1387188 (+) | Length | 341 a.a. |
| NCBI ID | WP_015444568.1 | Uniprot ID | Q9S4T1 |
| Organism | Legionella pneumophila strain AUSMDU00010536 isolate SBT211 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1381163..1392188
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJD98_RS06325 (GJD98_06325) | - | 1381597..1381914 (+) | 318 | WP_010947009.1 | DUF2845 domain-containing protein | - |
| GJD98_RS06330 (GJD98_06330) | - | 1381951..1382322 (+) | 372 | WP_010947010.1 | protease inhibitor I42 family protein | - |
| GJD98_RS06335 (GJD98_06335) | - | 1382370..1384094 (-) | 1725 | WP_010947011.1 | NAD-dependent malic enzyme | - |
| GJD98_RS06340 (GJD98_06340) | - | 1384174..1384557 (+) | 384 | WP_010947012.1 | hypothetical protein | - |
| GJD98_RS06345 (GJD98_06345) | surE | 1384560..1385315 (+) | 756 | WP_010947013.1 | 5'/3'-nucleotidase SurE | - |
| GJD98_RS06350 (GJD98_06350) | - | 1385334..1386077 (+) | 744 | WP_010947014.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| GJD98_RS06355 (GJD98_06355) | rpoS | 1386163..1387188 (+) | 1026 | WP_015444568.1 | RNA polymerase sigma factor RpoS | Regulator |
| GJD98_RS06360 (GJD98_06360) | hmgA | 1387291..1388541 (-) | 1251 | WP_010947016.1 | homogentisate 1,2-dioxygenase | - |
| GJD98_RS06365 (GJD98_06365) | - | 1388687..1389430 (+) | 744 | WP_010947017.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| GJD98_RS06370 (GJD98_06370) | ruvC | 1389430..1389954 (+) | 525 | WP_010947018.1 | crossover junction endodeoxyribonuclease RuvC | - |
| GJD98_RS06375 (GJD98_06375) | ruvA | 1389951..1390550 (+) | 600 | WP_010947019.1 | Holliday junction branch migration protein RuvA | - |
| GJD98_RS06380 (GJD98_06380) | - | 1390600..1390920 (+) | 321 | WP_010947020.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 341 a.a. Molecular weight: 39449.70 Da Isoelectric Point: 4.3732
>NTDB_id=349059 GJD98_RS06355 WP_015444568.1 1386163..1387188(+) (rpoS) [Legionella pneumophila strain AUSMDU00010536 isolate SBT211]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF
Nucleotide
Download Length: 1026 bp
>NTDB_id=349059 GJD98_RS06355 WP_015444568.1 1386163..1387188(+) (rpoS) [Legionella pneumophila strain AUSMDU00010536 isolate SBT211]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
67.509 |
81.232 |
0.548 |