Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EXU30_RS10485 Genome accession   NZ_CP036200
Coordinates   2466221..2467237 (+) Length   338 a.a.
NCBI ID   WP_130599838.1    Uniprot ID   A0A411PHJ8
Organism   Shewanella maritima strain D4-2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2461221..2472237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXU30_RS10465 (EXU30_10465) rsmB 2462145..2463428 (-) 1284 WP_130599829.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  EXU30_RS10470 (EXU30_10470) fmt 2463428..2464387 (-) 960 WP_130599831.1 methionyl-tRNA formyltransferase -
  EXU30_RS10475 (EXU30_10475) def 2464396..2464908 (-) 513 WP_130599833.1 peptide deformylase -
  EXU30_RS10480 (EXU30_10480) - 2465033..2466136 (+) 1104 WP_130599835.1 LysM peptidoglycan-binding domain-containing protein -
  EXU30_RS10485 (EXU30_10485) dprA 2466221..2467237 (+) 1017 WP_130599838.1 DNA-processing protein DprA Machinery gene
  EXU30_RS10490 (EXU30_10490) - 2467240..2467713 (+) 474 WP_130599840.1 DUF494 family protein -
  EXU30_RS10495 (EXU30_10495) - 2467774..2468343 (+) 570 WP_130599842.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  EXU30_RS10500 (EXU30_10500) - 2468664..2469230 (+) 567 WP_130599844.1 L-threonylcarbamoyladenylate synthase -
  EXU30_RS10505 (EXU30_10505) hemF 2469234..2470181 (+) 948 WP_130599846.1 oxygen-dependent coproporphyrinogen oxidase -
  EXU30_RS10510 (EXU30_10510) - 2470194..2470622 (-) 429 WP_130603413.1 group II truncated hemoglobin -
  EXU30_RS10515 (EXU30_10515) - 2470790..2472169 (+) 1380 WP_130599848.1 amidohydrolase -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36737.91 Da        Isoelectric Point: 6.0356

>NTDB_id=347507 EXU30_RS10485 WP_130599838.1 2466221..2467237(+) (dprA) [Shewanella maritima strain D4-2]
MDVEELRQRLEFEKQTLPLPSSSIEKLHIDHQRVEQALEWQAAADDHYILSRSDPLYPALLAEIPDPPPILFVKGGAHSL
VIPSVAIVGSRNASPAGLEIARTLAAELANQGFAVTSGLALGIDAAAHQGAINSSGKTIAVLGTGIDTIYPKRHRNLYQQ
VRESGCLVSEFWPDVGPFAGNFPKRNRIVSGLSLGVTVVEAALRSGSLITARLAMEQNREVFAVPGSVLSGHYQGCHQLI
QNGAKLVEKSADIIEELQSLSHFHLEQLQQRHHIEPMSNCNLPFPPLLASVGYETTTLDQVVEHSGQPLDLVLVQMLELE
LQGWVTAVAGGYVRLKRS

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=347507 EXU30_RS10485 WP_130599838.1 2466221..2467237(+) (dprA) [Shewanella maritima strain D4-2]
ATGGATGTTGAGGAGCTAAGGCAAAGGTTGGAGTTTGAAAAGCAAACACTGCCTTTACCTAGTTCCAGCATTGAAAAACT
CCATATTGATCATCAGCGCGTTGAGCAGGCGTTAGAGTGGCAAGCCGCGGCTGATGATCACTATATTCTCTCCCGATCAG
ACCCTCTTTATCCTGCTTTACTGGCAGAAATCCCTGATCCTCCACCCATACTATTTGTTAAAGGTGGTGCTCATAGTTTA
GTTATTCCAAGTGTGGCGATAGTTGGAAGTCGCAATGCGTCACCAGCTGGACTTGAGATCGCAAGAACGCTGGCAGCTGA
GTTGGCAAATCAGGGCTTTGCTGTTACCAGTGGTTTGGCGTTAGGTATTGATGCTGCCGCTCATCAAGGCGCGATTAATT
CAAGCGGGAAAACCATTGCCGTGTTAGGCACAGGTATCGACACCATATATCCCAAGCGTCATCGTAATTTATATCAGCAA
GTACGAGAGTCTGGTTGCTTGGTTAGCGAGTTCTGGCCTGATGTCGGCCCATTTGCCGGTAACTTCCCTAAGCGTAATCG
CATTGTCAGTGGTCTATCTTTGGGGGTGACAGTTGTCGAGGCTGCGCTGCGAAGTGGCTCGCTTATAACTGCCAGGCTTG
CCATGGAGCAAAACCGGGAAGTGTTTGCTGTACCAGGCTCGGTATTAAGTGGTCATTACCAGGGTTGTCACCAGCTTATT
CAAAATGGGGCAAAACTTGTCGAAAAATCGGCCGATATAATAGAAGAGTTGCAGAGTTTATCGCATTTCCACCTTGAACA
ATTACAACAACGTCACCATATAGAGCCCATGAGTAATTGTAATTTGCCATTTCCTCCCCTGTTAGCTAGTGTAGGATATG
AGACAACGACATTAGACCAAGTCGTTGAGCATAGTGGGCAACCATTAGATCTGGTGTTAGTACAAATGCTTGAGCTTGAA
TTACAAGGGTGGGTTACAGCGGTAGCCGGTGGTTACGTCAGATTAAAGAGGAGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(287-331)

DNA recombination-mediator protein A (DNA_processg_A)

(47-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411PHJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

51.393

95.562

0.491
  dprA Vibrio cholerae strain A1552

50.485

91.42

0.462
  dprA Legionella pneumophila strain ERS1305867

49.511

90.828

0.45
  dprA Glaesserella parasuis strain SC1401

46.057

93.787

0.432
  dprA Acinetobacter baylyi ADP1

40.469

100

0.408
  dprA Acinetobacter baumannii strain A118

44.068

87.278

0.385
  dprA Acinetobacter baumannii D1279779

43.729

87.278

0.382
  dprA Haemophilus influenzae Rd KW20

45.357

82.84

0.376

Multiple sequence alignment