Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   EXW48_RS14140 Genome accession   NZ_CP036101
Coordinates   2831460..2832041 (-) Length   193 a.a.
NCBI ID   WP_046959641.1    Uniprot ID   A0A2C5G5X9
Organism   Bacillus wiedmannii strain JAS28/2     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2826460..2837041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW48_RS14110 (EXW48_14220) - 2827089..2827568 (-) 480 WP_000106234.1 HIT family protein -
  EXW48_RS14115 (EXW48_14225) - 2827681..2827848 (-) 168 WP_000509286.1 hypothetical protein -
  EXW48_RS14120 (EXW48_14230) - 2828066..2828302 (+) 237 WP_116891997.1 hypothetical protein -
  EXW48_RS14125 (EXW48_14235) - 2828352..2829188 (-) 837 WP_000095064.1 proline/glycine betaine ABC transporter permease -
  EXW48_RS14130 (EXW48_14240) - 2829181..2830386 (-) 1206 WP_046959639.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  EXW48_RS14135 (EXW48_14245) - 2830558..2831415 (+) 858 WP_088081336.1 glycine betaine ABC transporter substrate-binding protein -
  EXW48_RS14140 (EXW48_14250) clpP 2831460..2832041 (-) 582 WP_046959641.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  EXW48_RS14145 (EXW48_14255) - 2832063..2832749 (-) 687 WP_046959642.1 RNA polymerase subunit sigma-70 -
  EXW48_RS14150 (EXW48_14260) - 2832892..2833212 (+) 321 WP_046954108.1 2Fe-2S iron-sulfur cluster-binding protein -
  EXW48_RS14155 (EXW48_14265) rpiA 2833217..2833879 (+) 663 WP_046959936.1 ribose 5-phosphate isomerase A -
  EXW48_RS14160 (EXW48_14270) - 2833986..2834420 (+) 435 WP_215561507.1 GNAT family N-acetyltransferase -
  EXW48_RS14165 (EXW48_14275) - 2834538..2835905 (-) 1368 WP_097994119.1 lytic polysaccharide monooxygenase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21275.49 Da        Isoelectric Point: 4.9215

>NTDB_id=346783 EXW48_RS14140 WP_046959641.1 2831460..2832041(-) (clpP) [Bacillus wiedmannii strain JAS28/2]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIYIYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKRDINKMIAEKTGQ
SIERVAHDTERDYFMTAEEAKEYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=346783 EXW48_RS14140 WP_046959641.1 2831460..2832041(-) (clpP) [Bacillus wiedmannii strain JAS28/2]
ATGAATGCAATTCCATATGTAGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
TCGCATTATTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCGG
AAGATGCAGAGAAAGATATTTATATATACATCAATAGCCCAGGTGGTTCAACGACAGCGGGTTTTGCCATATTAGATACG
ATGAATCTCATTAAACCAGATGTACAAACGCTATGCATGGGATTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGGTTTGCGCTCCCTAACAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCGCAAGGTCAGGCAA
CAGAAATTGAAATAACAGCGAAAAGAATACTAAAGTTAAAGCGTGATATTAATAAAATGATTGCAGAAAAAACGGGGCAA
TCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCTGAAGAAGCGAAAGAATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C5G5X9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.063

98.964

0.674
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.725

97.927

0.663
  clpP Streptococcus pneumoniae Rx1

56.25

99.482

0.56
  clpP Streptococcus pneumoniae D39

56.25

99.482

0.56
  clpP Streptococcus pneumoniae R6

56.25

99.482

0.56
  clpP Streptococcus pneumoniae TIGR4

56.25

99.482

0.56
  clpP Streptococcus thermophilus LMG 18311

55.208

99.482

0.549
  clpP Streptococcus thermophilus LMD-9

55.208

99.482

0.549
  clpP Streptococcus pyogenes JRS4

55.026

97.927

0.539
  clpP Streptococcus pyogenes MGAS315

55.026

97.927

0.539
  clpP Streptococcus mutans UA159

53.968

97.927

0.528
  clpP Lactococcus lactis subsp. cremoris KW2

53.439

97.927

0.523
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.323

97.927

0.503

Multiple sequence alignment