Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   EXW38_RS25165 Genome accession   NZ_CP036026
Coordinates   4829550..4830131 (+) Length   193 a.a.
NCBI ID   WP_002159906.1    Uniprot ID   J8FHM7
Organism   Bacillus mycoides strain BPN54/2     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4824550..4835131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW38_RS25130 (EXW38_25530) - 4825531..4825737 (+) 207 WP_000216167.1 DUF1657 domain-containing protein -
  EXW38_RS25135 (EXW38_25535) - 4825845..4826333 (+) 489 WP_002159909.1 YhcN/YlaJ family sporulation lipoprotein -
  EXW38_RS25140 (EXW38_25540) spoVAC 4826362..4826838 (+) 477 WP_002112810.1 stage V sporulation protein AC -
  EXW38_RS25145 (EXW38_25545) spoVAD 4826839..4827855 (+) 1017 WP_078173399.1 stage V sporulation protein AD -
  EXW38_RS25150 (EXW38_25550) spoVAE 4827852..4828202 (+) 351 WP_002112813.1 stage V sporulation protein AE -
  EXW38_RS25155 (EXW38_25555) - 4828214..4828420 (+) 207 WP_002112814.1 DUF1657 domain-containing protein -
  EXW38_RS25160 (EXW38_25560) - 4828441..4829310 (+) 870 WP_131229947.1 DUF421 domain-containing protein -
  EXW38_RS25165 (EXW38_25565) clpP 4829550..4830131 (+) 582 WP_002159906.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  EXW38_RS25170 (EXW38_25570) - 4830397..4830645 (-) 249 WP_002144903.1 HPr family phosphocarrier protein -
  EXW38_RS25175 (EXW38_25575) whiA 4830669..4831619 (-) 951 WP_002159905.1 DNA-binding protein WhiA -
  EXW38_RS25180 (EXW38_25580) - 4831708..4832661 (-) 954 WP_002159904.1 gluconeogenesis factor YvcK family protein -
  EXW38_RS25185 (EXW38_25585) rapZ 4832665..4833546 (-) 882 WP_002016084.1 RNase adapter RapZ -
  EXW38_RS25190 (EXW38_25590) - 4833567..4834025 (-) 459 WP_002124062.1 NUDIX hydrolase -
  EXW38_RS25195 (EXW38_25595) - 4834241..4835047 (-) 807 WP_215572174.1 DUF368 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21404.66 Da        Isoelectric Point: 5.0423

>NTDB_id=346050 EXW38_RS25165 WP_002159906.1 4829550..4830131(+) (clpP) [Bacillus mycoides strain BPN54/2]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAERALEYGLIDKIFTSR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=346050 EXW38_RS25165 WP_002159906.1 4829550..4830131(+) (clpP) [Bacillus mycoides strain BPN54/2]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAGGA
CCGCATCATTATGCTTGGTAGCGCAATTGATGACAACGTAGCAAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATCTATATCAACAGCCCTGGTGGTTCTATCACAGCTGGTATGGCAATTTACGATACA
ATGCAGTTTATTAAACCACAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTTCGCTCTTCCTAACAGTGAAGTAATGATTCACCAACCACTTGGCGGTGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCAAAACGCATCCTATTCTTACGCGAAAAATTAAACCAAATTCTTGCTGACCGCACAGGTCAA
CCACTTGAAGTTCTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAGAGCTCTAGAATACGGCTTAATCGA
TAAGATCTTTACAAGTCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8FHM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.052

98.964

0.891
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.553

97.409

0.658
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

59.474

98.446

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

57.368

98.446

0.565
  clpP Streptococcus pyogenes JRS4

56.316

98.446

0.554
  clpP Streptococcus pyogenes MGAS315

56.316

98.446

0.554
  clpP Streptococcus mutans UA159

56.021

98.964

0.554

Multiple sequence alignment