Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GFM36_RS18210 Genome accession   NZ_CP045645
Coordinates   3741949..3743994 (+) Length   681 a.a.
NCBI ID   WP_000204953.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1056     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3736949..3748994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFM36_RS18195 (GFM36_18270) plsB 3737430..3740003 (+) 2574 WP_000045404.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  GFM36_RS18200 (GFM36_18275) adeT2 3740047..3741033 (-) 987 WP_000712911.1 putative multidrug efflux protein AdeT2 -
  GFM36_RS18205 (GFM36_18280) - 3741113..3741928 (-) 816 WP_000547774.1 NAD(P)H-binding protein -
  GFM36_RS18210 (GFM36_18285) recG 3741949..3743994 (+) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG Machinery gene
  GFM36_RS18215 (GFM36_18290) comF 3743987..3744622 (+) 636 WP_000472273.1 phosphoribosyltransferase family protein Machinery gene
  GFM36_RS18220 (GFM36_18295) - 3744625..3745026 (-) 402 WP_000849705.1 NUDIX domain-containing protein -
  GFM36_RS18225 (GFM36_18300) - 3745041..3745622 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  GFM36_RS18230 (GFM36_18305) - 3745780..3746793 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  GFM36_RS18235 (GFM36_18310) - 3746863..3747150 (-) 288 WP_000250997.1 STAS domain-containing protein -
  GFM36_RS18240 (GFM36_18315) - 3747162..3747803 (-) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  GFM36_RS18245 (GFM36_18320) - 3747830..3748510 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 76435.01 Da        Isoelectric Point: 7.7343

>NTDB_id=345336 GFM36_RS18210 WP_000204953.1 3741949..3743994(+) (recG) [Acinetobacter baumannii strain XH1056]
MTSVHQLQGVGSASAALLEKLNIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGEVKSVDFPPGKRKSMAALIQD
EFGKVTLRFYHIYKNLTDKIKPGNRLRIFGEVRVGARGLELYHPEIQLINEHTPLPKTQLTAIYPSTDGLTQAKLREYVK
QALKHHSDALPELLPKQYTNGYALKEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLLTRRAYIRQIASPA
FPSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGAGKTLVAAVAACHALEADWQVALMAPTEILA
EQHYLNFKRWFEPLGITVAWLSGKQKGKARAHAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLAL
RNKGAEQLTPHQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLHRIASNCREGKQAYWVCTL
VEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNNELQLLIATTVIEVGVDVPNASIMVIENAER
LGLSQLHQLRGRVGRGAKASFCVLLYKPPLSQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLE
RDDHLLSQAHYVAQQVLKDYPEQADALLKRWLPEAPRYAYV

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=345336 GFM36_RS18210 WP_000204953.1 3741949..3743994(+) (recG) [Acinetobacter baumannii strain XH1056]
ATGACTTCAGTCCATCAGTTACAAGGCGTTGGATCGGCTTCAGCAGCCCTACTCGAAAAACTAAATATTTTTACCACAGA
TGATTTGCTGTTTCATCTGCCCCGTGATTATGAAGATCGCAGTACCATTATTCCTATGAATCAATTGGTAGTTGGTCGTA
GTTATTTACTCGAGGGTGAAGTCAAATCTGTTGATTTCCCTCCAGGTAAACGTAAATCTATGGCCGCATTAATACAAGAT
GAATTTGGTAAGGTGACTTTACGCTTTTATCATATTTATAAAAATTTAACCGACAAAATAAAACCTGGTAACCGTTTACG
TATTTTTGGTGAAGTTCGTGTAGGTGCACGAGGACTTGAGCTTTATCATCCAGAAATTCAACTTATTAATGAACATACAC
CACTACCAAAAACGCAGCTCACTGCAATTTATCCAAGTACCGATGGACTAACACAAGCTAAATTACGCGAATATGTTAAA
CAAGCGTTGAAGCATCATAGTGATGCCTTACCCGAGTTACTCCCTAAACAATATACAAATGGGTATGCACTCAAAGAAGC
TTTACATTACATTCATGAGCCGCCAGTTGATGCCAATATGATCCAATTGGCTCAAGGCTCTCATCCTGCGCAGCAACGTC
TTATTTTTGAAGAGCTGGTCGCACATCAAATTAGTCTTCTCACTCGACGTGCTTATATTCGCCAAATTGCTTCACCTGCT
TTTCCGAGTAGTAAAGTACTTGCAAAAAAACTGCTAGAAGCTTTACCTTTTCAAATGACCAACGCACAAAAACGTGTATC
AAAAGAAATTTTAAACGACTTAAAACAACATCAACCTATGCTACGTTTGGTACAAGGTGATGTAGGGGCTGGAAAAACTT
TAGTTGCAGCGGTTGCAGCATGTCACGCATTGGAAGCAGATTGGCAAGTTGCTTTAATGGCACCTACCGAAATTTTAGCA
GAGCAACATTATTTAAATTTTAAACGCTGGTTTGAACCTTTAGGTATTACGGTAGCTTGGTTGTCGGGTAAACAAAAAGG
GAAAGCGCGGGCACACGCTGAGCAACAAATTAAAGAAGGCCATGCTGAACTGATCGTGGGCACCCATGCCTTATTTCAAG
ATAACGTTGAGTTTGCAAAACTAGGACTCGTGATTATTGATGAACAGCACCGATTCGGGGTCGATCAGCGATTAGCCTTA
CGCAATAAAGGCGCCGAACAGCTCACCCCACATCAACTGGTCATGACTGCAACGCCAATTCCTAGAACACTGGCAATGAG
TGCTTATGGCGATTTAGATACATCGATTATTGATGAATTACCCCCAGGCCGAACTCCAATTCAGACCGTCACGATTCCGC
TAGATCGTCGTGAAGAAGTACTGCATCGAATTGCTTCAAACTGCCGAGAAGGCAAACAGGCCTACTGGGTATGTACTCTG
GTCGAACAGTCCGAAACTTTAGATGCTCAAGCCGCCGAAGCCACCTATCAAGAAATGAAAGAGCGCTTTCCTGAACTTAA
TATTGGTTTGGTTCATGGCAAAATGAAAGCCGATGAAAAACAGGCTGTCATGCAAGCATTTAAAAACAATGAACTACAAC
TGCTAATTGCCACAACTGTTATTGAGGTTGGAGTAGATGTACCCAATGCGTCAATTATGGTCATTGAGAATGCTGAACGA
TTAGGGCTTTCACAGCTACACCAATTGCGAGGGCGTGTAGGACGAGGTGCAAAAGCCAGTTTTTGTGTTCTTCTCTATAA
ACCACCACTTTCACAAAATGGGCAAGAAAGACTTTCAATTTTAAGAGAAAGTAATGATGGCTTTGTTATTGCTGAAAAAG
ATCTTGAGCTAAGAGGCCCGGGTGAGTTATTAGGAACAAAACAAACAGGTGATATGGGTTTCCGTGTCGCACGTTTAGAG
CGAGATGATCATTTATTGAGTCAAGCACACTACGTTGCACAACAAGTTCTAAAAGATTACCCTGAGCAAGCTGATGCCTT
ATTGAAGCGCTGGCTTCCTGAAGCTCCTCGATACGCATATGTTTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(466-576)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(605-663)

DEAD/DEAH box helicase (DEAD)

(262-422)

RecG wedge domain (RecG_wedge)

(7-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.925

98.238

0.49
  recG/mmsA Streptococcus pneumoniae R6

41.504

97.651

0.405
  recG/mmsA Streptococcus pneumoniae R36A

41.504

97.651

0.405
  recG Bacillus subtilis subsp. subtilis str. 168

38.574

100

0.389

Multiple sequence alignment