Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GEV49_RS34730 Genome accession   NZ_CP045547
Coordinates   7723852..7724454 (-) Length   200 a.a.
NCBI ID   WP_054100107.1    Uniprot ID   A0A6N9UH02
Organism   Streptomyces sp. SYP-A7193     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7718852..7729454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEV49_RS34700 (GEV49_35010) - 7719093..7720364 (-) 1272 WP_194280205.1 streptophobe family protein -
  GEV49_RS34705 (GEV49_35015) - 7720527..7720955 (-) 429 WP_153182103.1 hypothetical protein -
  GEV49_RS34710 (GEV49_35020) - 7720952..7721536 (-) 585 WP_153181242.1 PRC-barrel domain-containing protein -
  GEV49_RS34715 (GEV49_35025) - 7721705..7722160 (+) 456 WP_153181243.1 ATP-binding protein -
  GEV49_RS34720 (GEV49_35030) - 7722191..7723078 (-) 888 WP_153182104.1 RNA polymerase sigma factor SigF -
  GEV49_RS34725 (GEV49_35035) - 7723333..7723791 (+) 459 WP_153181244.1 helix-turn-helix domain-containing protein -
  GEV49_RS34730 (GEV49_35040) clpP 7723852..7724454 (-) 603 WP_054100107.1 ClpP family protease Regulator
  GEV49_RS34735 (GEV49_35045) clpP 7724456..7725109 (-) 654 WP_153181245.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GEV49_RS34740 (GEV49_35050) - 7725319..7725801 (+) 483 WP_153181246.1 VOC family protein -
  GEV49_RS34745 (GEV49_35055) - 7725895..7726692 (+) 798 WP_153181247.1 VOC family protein -
  GEV49_RS34750 (GEV49_35060) - 7726724..7727428 (+) 705 WP_153181248.1 ribonuclease H family protein -
  GEV49_RS34755 (GEV49_35065) - 7727526..7728788 (+) 1263 WP_381499589.1 FAD-dependent monooxygenase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21615.54 Da        Isoelectric Point: 5.0497

>NTDB_id=344943 GEV49_RS34730 WP_054100107.1 7723852..7724454(-) (clpP) [Streptomyces sp. SYP-A7193]
MGSYTIPNVVERTPQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSAPESEIAIYINSPGGSFTSLMAIY
DTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFALEHARVLLGQPASGGRQGTVSDLALQAKEMVRIRSQVEEVLARH
THHDVATLRADMDRDKVFTAEEAVAYGLADEVLARRLARV

Nucleotide


Download         Length: 603 bp        

>NTDB_id=344943 GEV49_RS34730 WP_054100107.1 7723852..7724454(-) (clpP) [Streptomyces sp. SYP-A7193]
ATGGGGAGCTACACGATTCCGAACGTCGTCGAGCGGACCCCGCAGGGCGAGCGGTCCTACGACGTGTTCAGCCGGCTCCT
GTCGGAGCGGATCATCTTCCTGGGGACCGAGATCGACGACGGCGTGGCCAACGTCGTGATCGCGCAGCTCCTGCATCTGG
AGTCGTCGGCCCCGGAGAGCGAGATCGCGATCTACATCAACTCTCCGGGCGGCTCGTTCACGTCGCTGATGGCCATCTAC
GACACGATGACCTTCGTCCAGGCGCCGATCTCGACGTTCTGCGTCGGGCAGGCGGCGTCCACGGCGGCCGTGCTGCTGGC
GGGCGGCGACCCCGGGCGGCGGTTCGCGCTGGAGCACGCACGGGTCCTGCTGGGGCAGCCGGCCAGCGGCGGACGCCAGG
GCACGGTCTCCGACCTGGCGCTCCAGGCCAAGGAGATGGTGCGGATCCGCTCCCAGGTGGAGGAGGTGCTGGCCCGCCAC
ACCCACCACGACGTCGCGACGCTGCGTGCGGACATGGACCGCGACAAGGTGTTCACCGCCGAGGAGGCGGTGGCGTACGG
GCTGGCCGACGAGGTGCTCGCCCGGCGCCTGGCGCGGGTGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N9UH02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

49.468

94

0.465
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

46.842

95

0.445
  clpP Streptococcus pyogenes MGAS315

40.212

94.5

0.38
  clpP Streptococcus pyogenes JRS4

40.212

94.5

0.38
  clpP Streptococcus pneumoniae TIGR4

39.583

96

0.38
  clpP Streptococcus pneumoniae Rx1

39.583

96

0.38
  clpP Streptococcus pneumoniae D39

39.583

96

0.38
  clpP Streptococcus pneumoniae R6

39.583

96

0.38
  clpP Streptococcus mutans UA159

39.153

94.5

0.37
  clpP Lactococcus lactis subsp. cremoris KW2

38.743

95.5

0.37
  clpP Streptococcus thermophilus LMG 18311

37.5

96

0.36
  clpP Streptococcus thermophilus LMD-9

37.5

96

0.36

Multiple sequence alignment