Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ELE36_RS03835 | Genome accession | NZ_CP035704 |
| Coordinates | 893264..894529 (-) | Length | 421 a.a. |
| NCBI ID | WP_129831836.1 | Uniprot ID | A0A411HGG3 |
| Organism | Pseudolysobacter antarcticus strain AQ6-296 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 888264..899529
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ELE36_RS03820 (ELE36_03820) | - | 890728..891669 (+) | 942 | WP_277987063.1 | Nudix family hydrolase | - |
| ELE36_RS03825 (ELE36_03825) | coaE | 891733..892359 (-) | 627 | WP_242512350.1 | dephospho-CoA kinase | - |
| ELE36_RS03830 (ELE36_03830) | pilD | 892356..893228 (-) | 873 | WP_129831835.1 | A24 family peptidase | Machinery gene |
| ELE36_RS03835 (ELE36_03835) | pilC | 893264..894529 (-) | 1266 | WP_129831836.1 | type II secretion system F family protein | Machinery gene |
| ELE36_RS03840 (ELE36_03840) | pilB | 894533..896251 (-) | 1719 | WP_129831837.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ELE36_RS03845 (ELE36_03845) | - | 896442..897296 (+) | 855 | WP_242512412.1 | glycosyltransferase family 2 protein | - |
| ELE36_RS03850 (ELE36_03850) | - | 897299..898099 (+) | 801 | WP_129831838.1 | class I SAM-dependent methyltransferase | - |
| ELE36_RS03855 (ELE36_03855) | - | 898096..898839 (+) | 744 | WP_129831839.1 | class I SAM-dependent methyltransferase | - |
Sequence
Protein
Download Length: 421 a.a. Molecular weight: 45287.63 Da Isoelectric Point: 10.0847
>NTDB_id=343993 ELE36_RS03835 WP_129831836.1 893264..894529(-) (pilC) [Pseudolysobacter antarcticus strain AQ6-296]
MATVAAIKAGKTTGAARAQVNQMLPFQWVGTDKRGVKLKGDHVGKSITMVKAELRRQGINVTSIKPKSKPLFGAAGKTVT
AREIAVFSRQLATMMAAGIPMVQAFEIVASGQDNPRMKNMLIDVKTSIEGGSSLTESLAKYPVQFDELYRNLVGAGEAAG
VLDSVLDTVATYKENLETIKAKIKKALFYPAIVLAVAFLVAAVLLIFVLPTFQTVFKAAGSDLPAFTLMLVNCSDFLIAY
WWLVLAVVIGSIVGLVMLKNRSPAFAHLIDRVMLKIPVIGKILHQSAIARFARTLGVTFRAGVPLVEALSAVGGATGSIV
YAQATERVREDVSVGHSLQLSMRQTNLFPNMVVQMVSIGEESGALDTMLFKIAEFYEQEVNNAVDTLSTLLEPFIMMIIG
VVVGSIVVGMYLPIFKLAATM
MATVAAIKAGKTTGAARAQVNQMLPFQWVGTDKRGVKLKGDHVGKSITMVKAELRRQGINVTSIKPKSKPLFGAAGKTVT
AREIAVFSRQLATMMAAGIPMVQAFEIVASGQDNPRMKNMLIDVKTSIEGGSSLTESLAKYPVQFDELYRNLVGAGEAAG
VLDSVLDTVATYKENLETIKAKIKKALFYPAIVLAVAFLVAAVLLIFVLPTFQTVFKAAGSDLPAFTLMLVNCSDFLIAY
WWLVLAVVIGSIVGLVMLKNRSPAFAHLIDRVMLKIPVIGKILHQSAIARFARTLGVTFRAGVPLVEALSAVGGATGSIV
YAQATERVREDVSVGHSLQLSMRQTNLFPNMVVQMVSIGEESGALDTMLFKIAEFYEQEVNNAVDTLSTLLEPFIMMIIG
VVVGSIVVGMYLPIFKLAATM
Nucleotide
Download Length: 1266 bp
>NTDB_id=343993 ELE36_RS03835 WP_129831836.1 893264..894529(-) (pilC) [Pseudolysobacter antarcticus strain AQ6-296]
ATGGCAACAGTAGCCGCAATCAAAGCCGGAAAAACAACCGGCGCTGCGCGAGCGCAGGTCAATCAGATGCTGCCGTTTCA
ATGGGTAGGAACTGACAAGCGCGGGGTCAAGCTCAAGGGCGACCATGTAGGTAAATCGATAACGATGGTCAAGGCGGAGC
TACGTCGCCAAGGTATCAACGTCACCTCCATCAAACCGAAGAGTAAACCGCTGTTTGGCGCTGCCGGAAAAACGGTTACT
GCGCGTGAAATTGCGGTCTTCAGTCGTCAGCTGGCAACGATGATGGCGGCCGGCATTCCGATGGTGCAAGCCTTCGAGAT
TGTGGCTAGTGGCCAGGACAATCCTCGCATGAAAAACATGTTGATCGATGTCAAGACATCAATCGAGGGTGGCTCGTCGT
TGACCGAATCGCTGGCCAAATATCCGGTGCAATTCGATGAGCTTTATCGCAACTTAGTAGGTGCGGGCGAAGCCGCTGGT
GTGCTCGATTCGGTATTGGATACGGTCGCCACGTACAAGGAAAATCTCGAAACCATAAAGGCCAAGATCAAGAAGGCGCT
TTTTTATCCTGCGATCGTTTTGGCGGTGGCGTTTTTGGTTGCTGCAGTCTTGTTGATATTTGTGCTGCCTACATTTCAAA
CCGTTTTCAAAGCAGCGGGCTCTGATCTTCCGGCGTTTACTTTGATGCTGGTAAATTGCTCGGATTTTCTGATCGCCTAC
TGGTGGTTGGTGCTAGCTGTGGTGATCGGCTCGATTGTCGGTTTGGTCATGCTGAAAAATCGCTCGCCCGCTTTCGCCCA
CTTGATTGATCGCGTCATGCTGAAAATTCCGGTCATCGGCAAAATCCTGCATCAATCAGCAATCGCGCGATTTGCCCGTA
CTCTTGGCGTCACATTCAGAGCCGGCGTTCCGCTGGTTGAAGCACTCAGCGCTGTTGGCGGCGCAACCGGCAGCATCGTC
TACGCGCAAGCGACCGAGCGAGTACGCGAAGACGTATCCGTAGGTCATTCCTTGCAACTCTCGATGCGGCAGACCAATCT
TTTCCCGAACATGGTGGTCCAGATGGTCTCGATTGGCGAGGAATCGGGCGCACTCGACACCATGCTCTTCAAGATCGCCG
AATTCTATGAGCAAGAGGTCAATAACGCGGTCGATACCTTGAGCACTCTGCTTGAGCCGTTCATCATGATGATTATCGGC
GTGGTTGTCGGCAGTATCGTGGTCGGTATGTATCTGCCGATTTTCAAACTCGCCGCAACGATGTAA
ATGGCAACAGTAGCCGCAATCAAAGCCGGAAAAACAACCGGCGCTGCGCGAGCGCAGGTCAATCAGATGCTGCCGTTTCA
ATGGGTAGGAACTGACAAGCGCGGGGTCAAGCTCAAGGGCGACCATGTAGGTAAATCGATAACGATGGTCAAGGCGGAGC
TACGTCGCCAAGGTATCAACGTCACCTCCATCAAACCGAAGAGTAAACCGCTGTTTGGCGCTGCCGGAAAAACGGTTACT
GCGCGTGAAATTGCGGTCTTCAGTCGTCAGCTGGCAACGATGATGGCGGCCGGCATTCCGATGGTGCAAGCCTTCGAGAT
TGTGGCTAGTGGCCAGGACAATCCTCGCATGAAAAACATGTTGATCGATGTCAAGACATCAATCGAGGGTGGCTCGTCGT
TGACCGAATCGCTGGCCAAATATCCGGTGCAATTCGATGAGCTTTATCGCAACTTAGTAGGTGCGGGCGAAGCCGCTGGT
GTGCTCGATTCGGTATTGGATACGGTCGCCACGTACAAGGAAAATCTCGAAACCATAAAGGCCAAGATCAAGAAGGCGCT
TTTTTATCCTGCGATCGTTTTGGCGGTGGCGTTTTTGGTTGCTGCAGTCTTGTTGATATTTGTGCTGCCTACATTTCAAA
CCGTTTTCAAAGCAGCGGGCTCTGATCTTCCGGCGTTTACTTTGATGCTGGTAAATTGCTCGGATTTTCTGATCGCCTAC
TGGTGGTTGGTGCTAGCTGTGGTGATCGGCTCGATTGTCGGTTTGGTCATGCTGAAAAATCGCTCGCCCGCTTTCGCCCA
CTTGATTGATCGCGTCATGCTGAAAATTCCGGTCATCGGCAAAATCCTGCATCAATCAGCAATCGCGCGATTTGCCCGTA
CTCTTGGCGTCACATTCAGAGCCGGCGTTCCGCTGGTTGAAGCACTCAGCGCTGTTGGCGGCGCAACCGGCAGCATCGTC
TACGCGCAAGCGACCGAGCGAGTACGCGAAGACGTATCCGTAGGTCATTCCTTGCAACTCTCGATGCGGCAGACCAATCT
TTTCCCGAACATGGTGGTCCAGATGGTCTCGATTGGCGAGGAATCGGGCGCACTCGACACCATGCTCTTCAAGATCGCCG
AATTCTATGAGCAAGAGGTCAATAACGCGGTCGATACCTTGAGCACTCTGCTTGAGCCGTTCATCATGATGATTATCGGC
GTGGTTGTCGGCAGTATCGTGGTCGGTATGTATCTGCCGATTTTCAAACTCGCCGCAACGATGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
55.668 |
94.299 |
0.525 |
| pilC | Pseudomonas stutzeri DSM 10701 |
51.777 |
93.587 |
0.485 |
| pilC | Acinetobacter baumannii D1279779 |
47.5 |
95.012 |
0.451 |
| pilC | Acinetobacter baylyi ADP1 |
46.535 |
95.962 |
0.447 |
| pilG | Neisseria gonorrhoeae MS11 |
45.553 |
88.124 |
0.401 |
| pilG | Neisseria meningitidis 44/76-A |
45.676 |
87.886 |
0.401 |
| pilC | Vibrio cholerae strain A1552 |
37.685 |
96.437 |
0.363 |