Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ELE36_RS03830 Genome accession   NZ_CP035704
Coordinates   892356..893228 (-) Length   290 a.a.
NCBI ID   WP_129831835.1    Uniprot ID   A0A411HGE6
Organism   Pseudolysobacter antarcticus strain AQ6-296     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 887356..898228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELE36_RS03815 (ELE36_03815) secA 887888..890605 (+) 2718 WP_129831833.1 preprotein translocase subunit SecA -
  ELE36_RS03820 (ELE36_03820) - 890728..891669 (+) 942 WP_277987063.1 Nudix family hydrolase -
  ELE36_RS03825 (ELE36_03825) coaE 891733..892359 (-) 627 WP_242512350.1 dephospho-CoA kinase -
  ELE36_RS03830 (ELE36_03830) pilD 892356..893228 (-) 873 WP_129831835.1 A24 family peptidase Machinery gene
  ELE36_RS03835 (ELE36_03835) pilC 893264..894529 (-) 1266 WP_129831836.1 type II secretion system F family protein Machinery gene
  ELE36_RS03840 (ELE36_03840) pilB 894533..896251 (-) 1719 WP_129831837.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ELE36_RS03845 (ELE36_03845) - 896442..897296 (+) 855 WP_242512412.1 glycosyltransferase family 2 protein -
  ELE36_RS03850 (ELE36_03850) - 897299..898099 (+) 801 WP_129831838.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31335.24 Da        Isoelectric Point: 7.4148

>NTDB_id=343992 ELE36_RS03830 WP_129831835.1 892356..893228(-) (pilD) [Pseudolysobacter antarcticus strain AQ6-296]
MLELLQASPVASVALAGVLGLIVGSFLNVVILRLPARMLHDWQQQSREFLELDAPTTPTPAPPGIVREPSHCPHCKHALG
AFENIPLISWLVLRGRCRHCQTPISIQYPLVELLTGIASAVIVWKFGLTYQAAAGLTFSWTLIALGGIDARTQLLPDNLT
LPLLWLGLLIALVPLFVDGNTSILGAIVGYLSLWSVYWLFKLLTGKEGMGHGDFKLLAALGAWMGWTSILPIVLLSSLVG
ALIGGGLMLLRGQDRSIPFAFGPFIAIAGWVQFVWGAEIIALWQHTLGLG

Nucleotide


Download         Length: 873 bp        

>NTDB_id=343992 ELE36_RS03830 WP_129831835.1 892356..893228(-) (pilD) [Pseudolysobacter antarcticus strain AQ6-296]
ATGCTTGAACTCCTGCAAGCCTCGCCCGTGGCGAGCGTGGCGCTCGCTGGCGTCCTGGGTCTGATCGTCGGCAGTTTCCT
CAACGTCGTGATTCTGCGTCTGCCGGCGCGCATGCTGCACGACTGGCAACAGCAGAGCCGCGAATTCCTTGAACTGGACG
CACCAACCACGCCGACTCCCGCGCCACCGGGCATCGTGCGTGAGCCTTCGCATTGCCCACACTGCAAACATGCGCTCGGC
GCCTTCGAAAATATCCCGCTAATTAGCTGGCTGGTACTACGCGGTCGCTGCCGGCACTGCCAAACGCCCATTTCGATCCA
ATATCCACTCGTGGAATTGCTGACCGGCATCGCTTCAGCCGTGATCGTATGGAAGTTCGGCCTGACCTATCAGGCCGCAG
CGGGACTGACTTTCAGCTGGACGCTGATCGCACTCGGTGGCATTGATGCGCGCACGCAGTTATTGCCGGACAATCTCACG
CTGCCGTTGCTCTGGCTTGGCTTGTTGATTGCCCTGGTTCCGCTGTTTGTCGATGGCAATACCAGCATCCTCGGCGCGAT
CGTCGGCTATCTCAGTCTGTGGTCGGTGTACTGGCTGTTCAAACTGCTCACGGGCAAGGAAGGCATGGGCCATGGCGACT
TCAAACTGCTGGCCGCGCTCGGCGCATGGATGGGCTGGACCAGCATCCTGCCGATCGTGTTGCTGTCGTCCCTCGTCGGC
GCCTTGATCGGTGGCGGCTTGATGCTGCTGCGTGGCCAGGATCGCTCCATTCCATTTGCCTTCGGCCCATTCATCGCGAT
TGCGGGCTGGGTGCAGTTTGTATGGGGCGCTGAGATCATCGCGTTATGGCAACACACGCTGGGATTGGGGTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-126)

Type IV leader peptidase family (Peptidase_A24)

(138-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411HGE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

51.195

100

0.517
  pilD Vibrio campbellii strain DS40M4

49.31

100

0.493
  pilD Acinetobacter nosocomialis M2

52.985

92.414

0.49
  pilD Acinetobacter baumannii D1279779

52.612

92.414

0.486
  pilD Neisseria gonorrhoeae MS11

45.985

94.483

0.434

Multiple sequence alignment