Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   EU512_RS06875 Genome accession   NZ_CP035541
Coordinates   1373996..1374316 (+) Length   106 a.a.
NCBI ID   WP_037558197.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain PK-01     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1368996..1379316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EU512_RS06845 (EU512_06850) - 1369783..1369986 (+) 204 WP_011275664.1 YqgQ family protein -
  EU512_RS06850 (EU512_06855) - 1369983..1370969 (+) 987 WP_037558191.1 ROK family glucokinase -
  EU512_RS06855 (EU512_06860) - 1370969..1371292 (+) 324 WP_011275666.1 MTH1187 family thiamine-binding protein -
  EU512_RS06860 (EU512_06865) - 1371294..1371920 (+) 627 WP_011275667.1 MBL fold metallo-hydrolase -
  EU512_RS06865 (EU512_06870) comGA 1371972..1372946 (+) 975 WP_011275668.1 competence type IV pilus ATPase ComGA Machinery gene
  EU512_RS06870 (EU512_06875) comGB 1372918..1373982 (+) 1065 WP_037558195.1 competence type IV pilus assembly protein ComGB -
  EU512_RS06875 (EU512_06880) comGC 1373996..1374316 (+) 321 WP_037558197.1 competence type IV pilus major pilin ComGC Machinery gene
  EU512_RS06880 (EU512_06885) comGD 1374306..1374749 (+) 444 WP_016931110.1 competence type IV pilus minor pilin ComGD -
  EU512_RS06885 (EU512_06890) - 1374730..1375029 (+) 300 WP_037558199.1 hypothetical protein -
  EU512_RS06900 (EU512_06905) - 1375598..1376116 (+) 519 WP_037558203.1 shikimate kinase -
  EU512_RS06905 (EU512_06910) gcvT 1376305..1377396 (+) 1092 WP_011275675.1 glycine cleavage system aminomethyltransferase GcvT -
  EU512_RS06910 (EU512_06915) gcvPA 1377413..1378765 (+) 1353 WP_046464806.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11781.90 Da        Isoelectric Point: 9.7431

>NTDB_id=343086 EU512_RS06875 WP_037558197.1 1373996..1374316(+) (comGC) [Staphylococcus haemolyticus strain PK-01]
MKNHFKNLKKLKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHIQSTGCEAQVKMINSQIEAYTLKHNRTPSNINDLIND
GLIKEGQKQCRSGETITISNGEAIAN

Nucleotide


Download         Length: 321 bp        

>NTDB_id=343086 EU512_RS06875 WP_037558197.1 1373996..1374316(+) (comGC) [Staphylococcus haemolyticus strain PK-01]
ATGAAGAATCACTTTAAAAATTTAAAAAAGTTAAAAGCCTTTACTCTAATAGAAATGTTATTAGTATTACTAATTATCAG
CGTATTACTAATATTAATTATTCCAAACATTGCAAAACAAACAGCTCATATCCAGTCCACAGGTTGTGAAGCTCAAGTCA
AAATGATAAATAGTCAAATAGAAGCATATACATTAAAACATAATCGAACACCTTCTAATATAAATGATCTTATAAATGAT
GGCCTTATAAAAGAAGGACAAAAACAATGCAGATCGGGAGAAACAATTACAATATCTAATGGTGAGGCTATTGCGAACTA
G

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

84.314

96.226

0.811
  comGC Staphylococcus aureus MW2

84.314

96.226

0.811
  comYC Streptococcus gordonii str. Challis substr. CH1

42.991

100

0.434
  comGC/cglC Streptococcus mitis SK321

45.745

88.679

0.406
  comGC/cglC Streptococcus pneumoniae TIGR4

44.681

88.679

0.396
  comGC/cglC Streptococcus mitis NCTC 12261

49.383

76.415

0.377
  comGC/cglC Streptococcus pneumoniae R6

48.148

76.415

0.368
  comGC/cglC Streptococcus pneumoniae D39

48.148

76.415

0.368
  comGC/cglC Streptococcus pneumoniae Rx1

48.148

76.415

0.368

Multiple sequence alignment