Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   ETT45_RS04935 Genome accession   NZ_CP035454
Coordinates   966430..966618 (-) Length   62 a.a.
NCBI ID   WP_011054546.1    Uniprot ID   A0A5S4TJS4
Organism   Streptococcus pyogenes strain emm54     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 958842..1010735 966430..966618 within 0


Gene organization within MGE regions


Location: 958842..1010735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT45_RS04900 (ETT45_04895) pfkA 958842..959855 (-) 1014 WP_002984444.1 6-phosphofructokinase -
  ETT45_RS04905 (ETT45_04900) - 959935..963045 (-) 3111 WP_002984441.1 DNA polymerase III subunit alpha -
  ETT45_RS04910 (ETT45_04905) - 963230..963601 (+) 372 WP_002989617.1 GntR family transcriptional regulator -
  ETT45_RS04915 (ETT45_04910) - 963601..964299 (+) 699 WP_002984437.1 ABC transporter ATP-binding protein -
  ETT45_RS04920 (ETT45_04915) - 964309..965094 (+) 786 WP_002984433.1 hypothetical protein -
  ETT45_RS04925 (ETT45_04920) - 965225..965839 (-) 615 WP_002989607.1 TVP38/TMEM64 family protein -
  ETT45_RS04935 (ETT45_04930) prx 966430..966618 (-) 189 WP_011054546.1 hypothetical protein Regulator
  ETT45_RS04940 (ETT45_04935) spel 966733..967521 (-) 789 WP_020833516.1 streptococcal pyrogenic exotoxin SpeL -
  ETT45_RS04945 (ETT45_04940) spem 967803..968516 (-) 714 WP_038431384.1 streptococcal pyrogenic exotoxin SpeM -
  ETT45_RS04950 (ETT45_04945) - 968819..969685 (-) 867 WP_014635498.1 DUF334 domain-containing protein -
  ETT45_RS04955 (ETT45_04950) - 969673..970197 (-) 525 WP_011017840.1 Panacea domain-containing protein -
  ETT45_RS04960 (ETT45_04955) - 970337..971545 (-) 1209 WP_038431388.1 glucosaminidase domain-containing protein -
  ETT45_RS04965 (ETT45_04960) - 971661..971888 (-) 228 WP_000609113.1 phage holin -
  ETT45_RS04970 (ETT45_04965) - 971885..972160 (-) 276 WP_002987582.1 hypothetical protein -
  ETT45_RS04975 (ETT45_04970) - 972170..972536 (-) 367 Protein_911 DUF1366 domain-containing protein -
  ETT45_RS04980 (ETT45_04975) - 972539..972970 (-) 432 WP_053308473.1 DUF1617 family protein -
  ETT45_RS04985 (ETT45_04980) - 972982..974886 (-) 1905 WP_136129595.1 gp58-like family protein -
  ETT45_RS04990 (ETT45_04985) hylP 974901..976013 (-) 1113 WP_136098298.1 hyaluronoglucosaminidase -
  ETT45_RS04995 (ETT45_04990) - 976010..978154 (-) 2145 WP_136129596.1 phage tail spike protein -
  ETT45_RS05000 (ETT45_04995) - 978151..978858 (-) 708 WP_136129597.1 distal tail protein Dit -
  ETT45_RS05005 (ETT45_05000) - 978858..982781 (-) 3924 WP_111685764.1 phage tail tape measure protein -
  ETT45_RS08820 - 982794..982961 (-) 168 WP_014411856.1 hypothetical protein -
  ETT45_RS05010 (ETT45_05005) gpG 982991..983317 (-) 327 WP_014411857.1 phage tail assembly chaperone G -
  ETT45_RS05015 (ETT45_05010) - 983370..983978 (-) 609 WP_014411858.1 major tail protein -
  ETT45_RS05020 (ETT45_05015) - 983995..984420 (-) 426 WP_002985347.1 hypothetical protein -
  ETT45_RS05025 (ETT45_05020) - 984417..984794 (-) 378 WP_002985349.1 HK97-gp10 family putative phage morphogenesis protein -
  ETT45_RS05030 (ETT45_05025) - 984791..985138 (-) 348 WP_063632712.1 phage head closure protein -
  ETT45_RS05035 (ETT45_05030) - 985135..985437 (-) 303 WP_063631325.1 head-tail connector protein -
  ETT45_RS08825 - 985440..985586 (-) 147 WP_023610896.1 hypothetical protein -
  ETT45_RS05040 (ETT45_05035) - 985573..986775 (-) 1203 WP_023610889.1 phage major capsid protein -
  ETT45_RS05045 (ETT45_05040) - 986801..987466 (-) 666 WP_136129600.1 head maturation protease, ClpP-related -
  ETT45_RS05050 (ETT45_05045) - 987444..988664 (-) 1221 WP_063631323.1 phage portal protein -
  ETT45_RS05055 (ETT45_05050) - 988698..988922 (-) 225 WP_002985363.1 hypothetical protein -
  ETT45_RS08830 - 988915..989085 (-) 171 WP_002985365.1 hypothetical protein -
  ETT45_RS05060 (ETT45_05055) - 989082..990836 (-) 1755 WP_136129630.1 terminase large subunit -
  ETT45_RS05065 (ETT45_05060) - 990840..991070 (-) 231 WP_085577347.1 hypothetical protein -
  ETT45_RS05070 (ETT45_05065) - 991073..991540 (-) 468 WP_002985371.1 phage terminase small subunit P27 family -
  ETT45_RS05075 (ETT45_05070) - 991708..992049 (-) 342 WP_136129601.1 HNH endonuclease -
  ETT45_RS05085 (ETT45_05080) - 992647..993081 (-) 435 WP_032461637.1 ArpU family phage packaging/lysis transcriptional regulator -
  ETT45_RS05090 (ETT45_05085) - 993532..994035 (-) 504 WP_032461638.1 DUF1642 domain-containing protein -
  ETT45_RS05095 (ETT45_05090) - 994032..994325 (-) 294 WP_032461639.1 hypothetical protein -
  ETT45_RS05100 (ETT45_05095) - 994322..994507 (-) 186 WP_011054812.1 hypothetical protein -
  ETT45_RS09170 - 994616..994720 (-) 105 Protein_939 SAM-dependent methyltransferase -
  ETT45_RS05110 (ETT45_05105) - 994723..995058 (-) 336 WP_011054813.1 hypothetical protein -
  ETT45_RS05115 (ETT45_05110) - 995061..995345 (-) 285 WP_032461310.1 hypothetical protein -
  ETT45_RS05120 (ETT45_05115) - 995342..995722 (-) 381 WP_020833536.1 YopX family protein -
  ETT45_RS05125 (ETT45_05120) - 995732..996001 (-) 270 WP_020833537.1 hypothetical protein -
  ETT45_RS05130 (ETT45_05125) - 995998..996273 (-) 276 WP_020833538.1 nucleotide modification associated domain-containing protein -
  ETT45_RS09075 (ETT45_05130) - 996270..996501 (-) 232 Protein_945 hypothetical protein -
  ETT45_RS05140 (ETT45_05135) - 996498..996854 (-) 357 WP_032462868.1 hypothetical protein -
  ETT45_RS05145 (ETT45_05140) - 996838..997122 (-) 285 WP_011017874.1 VRR-NUC domain-containing protein -
  ETT45_RS05150 (ETT45_05145) - 997142..998011 (-) 870 WP_020833541.1 bifunctional DNA primase/polymerase -
  ETT45_RS05155 (ETT45_05150) - 998278..999831 (-) 1554 WP_002984332.1 hypothetical protein -
  ETT45_RS05160 (ETT45_05155) - 999849..1000331 (-) 483 WP_002984328.1 DUF669 domain-containing protein -
  ETT45_RS05165 (ETT45_05160) - 1000336..1001760 (-) 1425 Protein_951 DEAD/DEAH box helicase -
  ETT45_RS05170 (ETT45_05165) - 1001775..1002458 (-) 684 WP_002984321.1 AAA family ATPase -
  ETT45_RS05175 (ETT45_05170) - 1002455..1002739 (-) 285 WP_002984318.1 hypothetical protein -
  ETT45_RS05180 (ETT45_05175) - 1002736..1002930 (-) 195 WP_002984315.1 hypothetical protein -
  ETT45_RS05185 (ETT45_05180) - 1002930..1003259 (-) 330 WP_002984312.1 hypothetical protein -
  ETT45_RS05190 (ETT45_05185) - 1003340..1003477 (-) 138 WP_002984309.1 hypothetical protein -
  ETT45_RS05195 (ETT45_05190) - 1003474..1003770 (-) 297 WP_011017882.1 MerR family transcriptional regulator -
  ETT45_RS05200 (ETT45_05195) - 1003848..1004024 (-) 177 WP_002995990.1 helix-turn-helix domain-containing protein -
  ETT45_RS05205 (ETT45_05200) - 1004168..1004392 (+) 225 WP_048327839.1 hypothetical protein -
  ETT45_RS05210 (ETT45_05205) - 1004521..1005243 (-) 723 WP_046176843.1 phage antirepressor KilAC domain-containing protein -
  ETT45_RS05215 (ETT45_05210) - 1005276..1005464 (-) 189 WP_046176844.1 helix-turn-helix transcriptional regulator -
  ETT45_RS05220 (ETT45_05215) - 1005520..1006359 (+) 840 WP_136118406.1 DUF4393 domain-containing protein -
  ETT45_RS05225 (ETT45_05220) - 1006538..1006696 (-) 159 WP_014635529.1 hypothetical protein -
  ETT45_RS05230 (ETT45_05225) - 1006755..1006970 (+) 216 WP_014635530.1 hypothetical protein -
  ETT45_RS08835 - 1006956..1007105 (-) 150 WP_014635531.1 hypothetical protein -
  ETT45_RS05235 (ETT45_05230) - 1007464..1008228 (+) 765 WP_136118408.1 helix-turn-helix transcriptional regulator -
  ETT45_RS05240 (ETT45_05235) - 1008238..1008543 (+) 306 WP_046166079.1 membrane protein -
  ETT45_RS05245 (ETT45_05240) - 1008664..1009752 (+) 1089 WP_011054595.1 site-specific integrase -
  ETT45_RS05250 (ETT45_05245) - 1010115..1010735 (+) 621 WP_002989605.1 DUF3862 domain-containing protein -

Sequence


Protein


Download         Length: 62 a.a.        Molecular weight: 7226.17 Da        Isoelectric Point: 3.9947

>NTDB_id=342468 ETT45_RS04935 WP_011054546.1 966430..966618(-) (prx) [Streptococcus pyogenes strain emm54]
MLTYDEFKQAIDDGYIVGDTVMIVRKNGQIFDYVLPHEEARNGEVVTEEKVEEVMVELDYIK

Nucleotide


Download         Length: 189 bp        

>NTDB_id=342468 ETT45_RS04935 WP_011054546.1 966430..966618(-) (prx) [Streptococcus pyogenes strain emm54]
ATGCTAACATACGACGAATTTAAGCAAGCTATTGATGACGGATATATCGTAGGAGACACAGTTATGATCGTGCGTAAAAA
CGGACAGATTTTTGATTATGTGTTGCCGCATGAGGAAGCGAGAAATGGAGAAGTTGTGACAGAGGAGAAGGTGGAAGAAG
TGATGGTGGAATTAGACTATATCAAATGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5S4TJS4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

100

100

1

  prx Streptococcus pyogenes MGAS315

84.746

95.161

0.806

  prx Streptococcus pyogenes MGAS8232

84.483

93.548

0.79

  prx Streptococcus pyogenes MGAS315

82.759

93.548

0.774

  prx Streptococcus pyogenes MGAS315

77.966

95.161

0.742

  prx Streptococcus pyogenes MGAS315

87.805

66.129

0.581

  prx Streptococcus pyogenes MGAS315

76.19

67.742

0.516


Multiple sequence alignment