Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   ETT47_RS07500 Genome accession   NZ_CP035452
Coordinates   1503175..1503717 (-) Length   180 a.a.
NCBI ID   WP_076612468.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm123     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1498175..1508717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT47_RS07475 (ETT47_07465) - 1499532..1500377 (+) 846 WP_002982833.1 mechanosensitive ion channel family protein -
  ETT47_RS07480 (ETT47_07470) - 1500442..1501002 (-) 561 WP_002995157.1 TIGR01440 family protein -
  ETT47_RS07485 (ETT47_07475) - 1501016..1501486 (-) 471 WP_109991495.1 ECF transporter S component -
  ETT47_RS07490 (ETT47_07480) - 1501476..1502240 (-) 765 WP_002988136.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ETT47_RS07495 (ETT47_07485) truA 1502230..1502979 (-) 750 WP_002988132.1 tRNA pseudouridine(38-40) synthase TruA -
  ETT47_RS07500 (ETT47_07490) comX/sigX/comX2/sigX2 1503175..1503717 (-) 543 WP_076612468.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 21911.66 Da        Isoelectric Point: 10.0375

>NTDB_id=342368 ETT47_RS07500 WP_076612468.1 1503175..1503717(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain emm123]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFA

Nucleotide


Download         Length: 543 bp        

>NTDB_id=342368 ETT47_RS07500 WP_076612468.1 1503175..1503717(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain emm123]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTTCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.