Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   BACIH_RS12645 Genome accession   NZ_CP044360
Coordinates   2574658..2575353 (-) Length   231 a.a.
NCBI ID   WP_007408165.1    Uniprot ID   A7Z793
Organism   Bacillus amyloliquefaciens strain V167     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2569658..2580353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACIH_RS12615 (BACIH_2576) - 2569671..2570475 (-) 805 Protein_2454 peptidoglycan DD-metalloendopeptidase family protein -
  BACIH_RS12620 (BACIH_2578) minD 2570603..2571406 (-) 804 WP_016938784.1 septum site-determining protein MinD -
  BACIH_RS12625 (BACIH_2579) minC 2571409..2572089 (-) 681 WP_012118104.1 septum site-determining protein MinC -
  BACIH_RS12630 (BACIH_2580) mreD 2572143..2572661 (-) 519 WP_007408167.1 rod shape-determining protein MreD -
  BACIH_RS12635 (BACIH_2581) mreC 2572658..2573521 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  BACIH_RS12640 (BACIH_2582) mreB 2573552..2574565 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  BACIH_RS12645 (BACIH_2583) ysxA/radC 2574658..2575353 (-) 696 WP_007408165.1 DNA repair protein RadC Machinery gene
  BACIH_RS12650 (BACIH_2584) - 2575385..2575954 (-) 570 WP_012118105.1 nucleoside triphosphate pyrophosphatase -
  BACIH_RS12655 (BACIH_2585) - 2576095..2577096 (-) 1002 WP_012118106.1 SPOR domain-containing protein -
  BACIH_RS12660 (BACIH_2586) comC 2577222..2577974 (-) 753 WP_012118107.1 A24 family peptidase Machinery gene
  BACIH_RS12665 (BACIH_2587) - 2578114..2579406 (-) 1293 WP_012118108.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26080.30 Da        Isoelectric Point: 9.1909

>NTDB_id=342301 BACIH_RS12645 WP_007408165.1 2574658..2575353(-) (ysxA/radC) [Bacillus amyloliquefaciens strain V167]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=342301 BACIH_RS12645 WP_007408165.1 2574658..2575353(-) (ysxA/radC) [Bacillus amyloliquefaciens strain V167]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGACTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGTGTTCACAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.879

100

0.879
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429

Multiple sequence alignment