Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   ETT50_RS08165 Genome accession   NZ_CP035449
Coordinates   1566220..1566771 (-) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm56     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1561220..1571771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT50_RS08130 (ETT50_08125) - 1561224..1561967 (-) 744 WP_014407307.1 class I SAM-dependent methyltransferase -
  ETT50_RS08135 (ETT50_08130) rsfS 1562015..1562368 (-) 354 WP_011017339.1 ribosome silencing factor -
  ETT50_RS08140 (ETT50_08135) yqeK 1562392..1562985 (-) 594 WP_032464816.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ETT50_RS08145 (ETT50_08140) - 1562982..1563614 (-) 633 WP_014407306.1 nicotinate-nucleotide adenylyltransferase -
  ETT50_RS08150 (ETT50_08145) yhbY 1563683..1563991 (-) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  ETT50_RS08155 (ETT50_08150) yqeH 1564016..1565134 (-) 1119 WP_032464815.1 ribosome biogenesis GTPase YqeH -
  ETT50_RS08160 (ETT50_08155) - 1565134..1565661 (-) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  ETT50_RS08165 (ETT50_08160) comX/sigX/comX2/sigX2 1566220..1566771 (-) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=342206 ETT50_RS08165 WP_010921894.1 1566220..1566771(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain emm56]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=342206 ETT50_RS08165 WP_010921894.1 1566220..1566771(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain emm56]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATTTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.