Detailed information NTG0341552

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: F6X00_RS15300
• Genome accession: NZ_CP044206
• Coordinates: 3139117..3140397 (-)
• Length: 426 a.a.
• NCBI ID: WP_011078148.1
• Uniprot ID: Q7MMG6
• Organism: Vibrio vulnificus strain Vv180806
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3134117..3145397

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F6X00_RS15285 (F6X00_15630)	ppiD	3134145..3136004 (-)	1860	WP_045619880.1	peptidylprolyl isomerase	-
F6X00_RS15290 (F6X00_15635)	-	3136181..3136453 (-)	273	WP_013572181.1	HU family DNA-binding protein	-
F6X00_RS15295 (F6X00_15640)	lon	3136647..3138998 (-)	2352	WP_045619879.1	endopeptidase La	-
F6X00_RS15300 (F6X00_15645)	clpX	3139117..3140397 (-)	1281	WP_011078148.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
F6X00_RS15305 (F6X00_15650)	clpP	3140468..3141094 (-)	627	WP_011078149.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
F6X00_RS15310 (F6X00_15655)	tig	3141200..3142498 (-)	1299	WP_045619878.1	trigger factor	-
F6X00_RS15315 (F6X00_15660)	-	3143050..3144837 (+)	1788	WP_182290066.1	ATP-binding protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46542.04 Da
• Isoelectric Point: 4.5889

>NTDB_id=341552 F6X00_RS15300 WP_011078148.1 3139117..3140397(-) (clpX) [Vibrio vulnificus strain Vv180806]
MTDKSKESGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKDVLPKRESEALPTPREIRAHLDDYVI
GQDHAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVAKAERGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTIASVPPQGGRKHPQQEFLQV
DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDESKTVGELFTQVEPEDLVKYGLIPEFIGRLPVTASLTELD
EEALIQILCQPKNALTKQYAALFELEGADLEFREDALKAIAKKAMERKTGARGLRSILEGVLLETMYELPSMDDVSKVVI
DESVINGESEPLLIYTNSDSQAAGAE

Nucleotide

• Length: 1281 bp

>NTDB_id=341552 F6X00_RS15300 WP_011078148.1 3139117..3140397(-) (clpX) [Vibrio vulnificus strain Vv180806]
ATGACAGACAAAAGCAAAGAGAGTGGTAGTGGTAAGTTGCTTTACTGCTCTTTCTGCGGCAAAAGCCAGCACGAAGTTCG
CAAGCTAATCGCTGGTCCATCCGTTTACATCTGTGACGAATGTGTCGATTTATGTAACGACATCATCCGTGAAGAGATCA
AAGATGTGCTTCCAAAACGCGAATCTGAAGCGTTGCCAACGCCTCGTGAGATCCGTGCACACCTTGATGACTATGTAATC
GGTCAAGACCATGCGAAAAAAGTGCTCGCGGTTGCGGTATATAACCACTACAAGCGTTTACGTAATGGTGACACAACGAG
TGATGGCGTGGAGCTAGGTAAGAGTAACATCTTGCTGATCGGCCCAACAGGTAGCGGTAAGACGTTGCTTGCTGAGACGC
TTGCGCGTTTCCTCGATGTACCGTTCACTATGGCAGATGCCACGACGCTAACAGAAGCGGGTTATGTGGGCGAAGATGTT
GAAAACATCATTCAAAAGTTGCTTCAGAAATGTGATTACGACGTAGCGAAAGCAGAGCGTGGTATTGTGTATATCGATGA
AATTGACAAGATTTCTCGTAAAGCAGAAAACCCATCTATTACTCGTGACGTTTCTGGTGAAGGCGTTCAGCAAGCGTTGC
TTAAACTGGTTGAAGGTACGATTGCTTCTGTACCACCTCAAGGTGGTCGTAAGCATCCTCAGCAAGAGTTTTTGCAAGTG
GATACGTCAAAGATCCTCTTTATCTGTGGTGGTGCATTTGCCGGTCTAGATAAAGTGATTGAACAACGCGTTGCAACAGG
TACCGGCATTGGTTTTGGTGCGGAAGTCCGCTCTAAAGACGAAAGCAAAACAGTGGGCGAATTGTTCACTCAGGTAGAGC
CAGAAGATCTTGTGAAATATGGTTTGATTCCTGAGTTTATTGGTCGTCTACCAGTGACCGCTTCGTTGACCGAGTTAGAC
GAAGAAGCATTAATTCAGATTCTTTGCCAACCAAAAAATGCGCTAACAAAGCAATATGCAGCGCTGTTTGAACTGGAAGG
TGCGGATCTTGAGTTCAGAGAAGATGCGCTAAAAGCGATCGCGAAAAAAGCGATGGAGCGTAAAACAGGCGCTCGTGGCT
TGCGTTCAATTTTGGAAGGCGTGTTGCTAGAAACCATGTATGAACTGCCATCGATGGACGACGTGAGCAAAGTTGTCATT
GATGAATCGGTGATTAATGGTGAATCAGAGCCGCTTTTGATTTACACCAACAGTGATAGCCAAGCCGCTGGCGCTGAGTA
A

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

3D structure

• AlphaFold DB: Q7MMG6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	59.102	94.131	0.556
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.062	95.07	0.523