Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   ETT64_RS03590 Genome accession   NZ_CP035435
Coordinates   667247..667429 (+) Length   60 a.a.
NCBI ID   WP_136289652.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm64.3     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 622189..667429 667247..667429 within 0


Gene organization within MGE regions


Location: 622189..667429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT64_RS03250 (ETT64_03250) - 622189..622464 (+) 276 WP_002983920.1 HU family DNA-binding protein -
  ETT64_RS03255 (ETT64_03255) - 622553..623695 (-) 1143 WP_003051793.1 site-specific integrase -
  ETT64_RS03260 (ETT64_03260) - 623820..624125 (-) 306 WP_011106738.1 membrane protein -
  ETT64_RS03265 (ETT64_03265) - 624135..624923 (-) 789 WP_030127591.1 S24 family peptidase -
  ETT64_RS09170 - 625294..625443 (+) 150 WP_021340643.1 hypothetical protein -
  ETT64_RS03270 (ETT64_03270) - 625429..625644 (-) 216 WP_014635530.1 hypothetical protein -
  ETT64_RS03275 (ETT64_03275) - 625703..625861 (+) 159 WP_021340638.1 hypothetical protein -
  ETT64_RS03280 (ETT64_03280) - 625960..626601 (-) 642 WP_001008979.1 hypothetical protein -
  ETT64_RS03285 (ETT64_03285) - 626694..626933 (+) 240 WP_014411882.1 helix-turn-helix transcriptional regulator -
  ETT64_RS03290 (ETT64_03290) - 626944..627705 (+) 762 WP_023610918.1 phage antirepressor KilAC domain-containing protein -
  ETT64_RS09270 - 627718..627849 (+) 132 WP_002985401.1 hypothetical protein -
  ETT64_RS03295 (ETT64_03295) - 627846..628028 (-) 183 WP_011889039.1 hypothetical protein -
  ETT64_RS03300 (ETT64_03300) - 628134..628445 (+) 312 WP_032465116.1 hypothetical protein -
  ETT64_RS09275 - 628447..628581 (+) 135 WP_261729371.1 hypothetical protein -
  ETT64_RS03305 (ETT64_03305) - 628703..629464 (+) 762 WP_014635613.1 DnaD domain protein -
  ETT64_RS03310 (ETT64_03310) - 629451..630233 (+) 783 WP_032465115.1 ATP-binding protein -
  ETT64_RS09175 - 630224..630361 (+) 138 WP_011018145.1 hypothetical protein -
  ETT64_RS03315 (ETT64_03315) - 630372..630728 (+) 357 WP_021341157.1 HTH domain-containing protein -
  ETT64_RS03320 (ETT64_03320) - 630709..630963 (+) 255 WP_011018143.1 hypothetical protein -
  ETT64_RS03325 (ETT64_03325) - 630985..631467 (+) 483 WP_011018142.1 siphovirus Gp157 family protein -
  ETT64_RS03330 (ETT64_03330) - 631468..632142 (+) 675 WP_032465114.1 ERF family protein -
  ETT64_RS03335 (ETT64_03335) ssb 632135..632560 (+) 426 WP_011285575.1 single-stranded DNA-binding protein Machinery gene
  ETT64_RS03340 (ETT64_03340) - 632566..632769 (+) 204 WP_011106686.1 hypothetical protein -
  ETT64_RS03345 (ETT64_03345) - 632769..633209 (+) 441 WP_011285574.1 RusA family crossover junction endodeoxyribonuclease -
  ETT64_RS03350 (ETT64_03350) - 633206..633562 (+) 357 WP_011284873.1 hypothetical protein -
  ETT64_RS09390 (ETT64_03355) - 633559..633810 (+) 252 WP_136074815.1 hypothetical protein -
  ETT64_RS03360 (ETT64_03360) - 633804..634088 (+) 285 WP_011054755.1 DUF3310 domain-containing protein -
  ETT64_RS03365 (ETT64_03365) - 634085..634354 (+) 270 WP_002987593.1 hypothetical protein -
  ETT64_RS03370 (ETT64_03370) - 634364..634777 (+) 414 WP_032460569.1 YopX family protein -
  ETT64_RS03375 (ETT64_03375) - 634774..635058 (+) 285 WP_011017570.1 hypothetical protein -
  ETT64_RS03380 (ETT64_03380) - 635062..635544 (+) 483 WP_011017571.1 class I SAM-dependent methyltransferase -
  ETT64_RS03385 (ETT64_03385) - 635534..636298 (+) 765 WP_021299463.1 site-specific DNA-methyltransferase -
  ETT64_RS03390 (ETT64_03390) - 636346..637077 (+) 732 WP_136281715.1 DUF1642 domain-containing protein -
  ETT64_RS09180 - 637074..637244 (+) 171 WP_164997036.1 hypothetical protein -
  ETT64_RS03395 (ETT64_03395) - 637517..637951 (+) 435 WP_032461637.1 ArpU family phage packaging/lysis transcriptional regulator -
  ETT64_RS03420 (ETT64_03420) - 638884..639798 (+) 915 WP_011284864.1 hypothetical protein -
  ETT64_RS09185 - 639888..640121 (-) 234 WP_002995461.1 hypothetical protein -
  ETT64_RS03430 (ETT64_03430) - 640416..640793 (-) 378 WP_002987543.1 type II toxin-antitoxin system HicB family antitoxin -
  ETT64_RS03435 (ETT64_03435) - 640845..641030 (-) 186 WP_001132273.1 type II toxin-antitoxin system HicA family toxin -
  ETT64_RS03445 (ETT64_03445) - 641266..641607 (+) 342 WP_029714359.1 HNH endonuclease -
  ETT64_RS03450 (ETT64_03450) - 641775..642242 (+) 468 WP_002985371.1 phage terminase small subunit P27 family -
  ETT64_RS03455 (ETT64_03455) - 642245..642475 (+) 231 WP_002985368.1 hypothetical protein -
  ETT64_RS03460 (ETT64_03460) - 642479..644233 (+) 1755 WP_024623442.1 terminase large subunit -
  ETT64_RS09190 - 644230..644400 (+) 171 WP_002985365.1 hypothetical protein -
  ETT64_RS03465 (ETT64_03465) - 644393..644617 (+) 225 WP_002985363.1 hypothetical protein -
  ETT64_RS03470 (ETT64_03470) - 644651..645871 (+) 1221 WP_063631323.1 phage portal protein -
  ETT64_RS03475 (ETT64_03475) - 645849..646514 (+) 666 WP_063631324.1 head maturation protease, ClpP-related -
  ETT64_RS03480 (ETT64_03480) - 646540..647742 (+) 1203 WP_023610889.1 phage major capsid protein -
  ETT64_RS09195 - 647729..647875 (+) 147 WP_023610896.1 hypothetical protein -
  ETT64_RS03485 (ETT64_03485) - 647878..648180 (+) 303 WP_063631325.1 head-tail connector protein -
  ETT64_RS03490 (ETT64_03490) - 648177..648524 (+) 348 WP_002985351.1 phage head closure protein -
  ETT64_RS03495 (ETT64_03495) - 648521..648898 (+) 378 WP_002985349.1 HK97-gp10 family putative phage morphogenesis protein -
  ETT64_RS03500 (ETT64_03500) - 648952..649320 (+) 369 WP_227874827.1 hypothetical protein -
  ETT64_RS03505 (ETT64_03505) - 649337..649945 (+) 609 WP_014411858.1 major tail protein -
  ETT64_RS03510 (ETT64_03510) gpG 649998..650324 (+) 327 WP_014411857.1 phage tail assembly chaperone G -
  ETT64_RS09200 - 650354..650521 (+) 168 WP_014411856.1 hypothetical protein -
  ETT64_RS03515 (ETT64_03515) - 650534..654457 (+) 3924 WP_002985338.1 phage tail tape measure protein -
  ETT64_RS03520 (ETT64_03520) - 654457..655164 (+) 708 WP_011527559.1 distal tail protein Dit -
  ETT64_RS03525 (ETT64_03525) - 655161..657305 (+) 2145 WP_136283779.1 phage tail spike protein -
  ETT64_RS03530 (ETT64_03530) - 657302..658423 (+) 1122 WP_136075485.1 hyaluronoglucosaminidase -
  ETT64_RS03535 (ETT64_03535) - 658433..660337 (+) 1905 WP_011017395.1 gp58-like family protein -
  ETT64_RS03540 (ETT64_03540) - 660349..660777 (+) 429 WP_002988448.1 DUF1617 family protein -
  ETT64_RS03545 (ETT64_03545) - 660780..661418 (+) 639 WP_046735270.1 hypothetical protein -
  ETT64_RS03550 (ETT64_03550) - 661430..661702 (+) 273 WP_011017397.1 hypothetical protein -
  ETT64_RS03555 (ETT64_03555) - 661699..661926 (+) 228 WP_003058873.1 phage holin -
  ETT64_RS03560 (ETT64_03560) - 662042..663244 (+) 1203 WP_020837640.1 glucosaminidase domain-containing protein -
  ETT64_RS03565 (ETT64_03565) - 663384..663908 (+) 525 WP_011017840.1 Panacea domain-containing protein -
  ETT64_RS03570 (ETT64_03570) - 663896..664762 (+) 867 WP_011054729.1 DUF334 domain-containing protein -
  ETT64_RS03575 (ETT64_03575) spek 665066..665845 (+) 780 WP_011054728.1 streptococcal pyrogenic exotoxin SpeK -
  ETT64_RS03580 (ETT64_03580) - 666321..666899 (+) 579 WP_136293084.1 phospholipase -
  ETT64_RS03590 (ETT64_03590) prx 667247..667429 (+) 183 WP_136289652.1 Paratox Regulator

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 6918.85 Da        Isoelectric Point: 4.2404

>NTDB_id=341433 ETT64_RS03590 WP_136289652.1 667247..667429(+) (prx) [Streptococcus pyogenes strain emm64.3]
MLTYDEFKQAIDDGYITGDTVMIVRKNGQIFDYVLPHEKVKNGEVVTDEKVEEVLVELSR

Nucleotide


Download         Length: 183 bp        

>NTDB_id=341433 ETT64_RS03590 WP_136289652.1 667247..667429(+) (prx) [Streptococcus pyogenes strain emm64.3]
ATGCTAACATACGACGAATTTAAGCAAGCAATTGATGACGGCTATATCACAGGAGACACAGTTATGATCGTGCGTAAAAA
CGGACAGATTTTTGATTATGTTTTGCCACATGAGAAAGTAAAGAATGGAGAAGTTGTGACAGACGAAAAAGTGGAAGAGG
TGCTGGTGGAGCTTTCGAGATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

91.667

100

0.917

  prx Streptococcus pyogenes MGAS8232

91.667

100

0.917

  prx Streptococcus pyogenes MGAS315

83.333

100

0.833

  prx Streptococcus pyogenes MGAS315

73.333

100

0.733

  prx Streptococcus pyogenes MGAS315

90.698

71.667

0.65

  prx Streptococcus pyogenes MGAS315

87.805

68.333

0.6

  prx Streptococcus pyogenes MGAS315

78.571

70

0.55


Multiple sequence alignment