Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   F4V23_RS01240 Genome accession   NZ_CP044175
Coordinates   251966..252832 (+) Length   288 a.a.
NCBI ID   WP_002781285.1    Uniprot ID   -
Organism   Campylobacter coli strain AR-0411     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 246966..257832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V23_RS01215 - 247400..248659 (-) 1260 WP_002781268.1 ComEC/Rec2 family competence protein -
  F4V23_RS01220 - 248659..249216 (-) 558 WP_002781270.1 DedA family protein -
  F4V23_RS01225 rny 249227..250780 (-) 1554 WP_002777382.1 ribonuclease Y -
  F4V23_RS01230 - 250701..251327 (-) 627 WP_002777380.1 5-formyltetrahydrofolate cyclo-ligase -
  F4V23_RS01235 - 251409..251966 (+) 558 WP_002777379.1 TlpA disulfide reductase family protein -
  F4V23_RS01240 pilA 251966..252832 (+) 867 WP_002781285.1 signal recognition particle-docking protein FtsY Machinery gene
  F4V23_RS01245 - 252829..253773 (-) 945 WP_002777375.1 GTP-binding protein -
  F4V23_RS01250 - 253766..254101 (-) 336 WP_002781288.1 hypothetical protein -
  F4V23_RS01255 - 254143..255024 (-) 882 WP_002781290.1 polysaccharide deacetylase -
  F4V23_RS01260 - 255027..255878 (-) 852 WP_002781292.1 carbon-nitrogen hydrolase family protein -
  F4V23_RS01265 radA/sms 256014..257354 (+) 1341 WP_002777369.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31830.88 Da        Isoelectric Point: 5.1228

>NTDB_id=341433 F4V23_RS01240 WP_002781285.1 251966..252832(+) (pilA) [Campylobacter coli strain AR-0411]
MFDFFKKGLAKTLESIVGVKGENKKITKDLLEEILLEADVAYEIVEEIIYYLPPSDEVKKEDLKRVMGSYFLYENKEFLD
EKPFVELILGVNGAGKTTSIAKLANLYKSQGQKVILGACDTFRAGAIEQLRLWSEKVGVDIVLTQQGHDPSAVAFDTISK
ARAKGFDKVIIDTAGRLQNQKNLANELEKIIRISAKAMPHAPHRKILVLDGTQGNAGILQAKAFNELVQLDGVIITKLDG
TAKGGALFSIARELELPILYIGVGEKMQDLIEFNAQNFLDTLLEGVFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=341433 F4V23_RS01240 WP_002781285.1 251966..252832(+) (pilA) [Campylobacter coli strain AR-0411]
ATGTTTGATTTTTTTAAAAAAGGACTTGCAAAAACCCTTGAAAGTATAGTGGGTGTTAAAGGTGAAAATAAAAAAATTAC
CAAAGATTTACTAGAGGAAATTTTACTTGAAGCAGATGTGGCGTATGAGATCGTAGAAGAAATCATTTATTATTTACCAC
CCAGTGATGAGGTTAAAAAAGAAGATTTAAAGCGTGTGATGGGTTCTTATTTTCTTTACGAAAATAAAGAATTCTTAGAT
GAAAAGCCTTTTGTGGAGCTTATTTTAGGGGTAAATGGCGCGGGTAAAACCACGAGTATAGCTAAGCTTGCTAATTTATA
CAAAAGCCAAGGTCAAAAAGTGATTTTAGGCGCTTGTGATACTTTTAGGGCAGGGGCGATAGAGCAGCTAAGACTTTGGT
CTGAAAAAGTAGGGGTAGATATAGTTTTAACCCAACAAGGTCATGATCCTTCGGCGGTTGCTTTTGATACTATTAGCAAG
GCTAGAGCTAAGGGTTTTGATAAGGTTATCATCGATACAGCGGGTCGTTTGCAAAATCAAAAAAATTTAGCCAATGAGCT
AGAGAAAATCATTAGAATTTCGGCTAAAGCTATGCCTCATGCCCCGCATAGAAAAATTTTAGTACTTGATGGTACTCAAG
GCAATGCCGGCATTTTACAAGCTAAAGCTTTTAATGAACTTGTTCAGCTTGATGGAGTTATTATTACTAAACTTGATGGC
ACAGCAAAGGGTGGAGCGCTTTTTAGTATAGCGCGTGAATTAGAACTTCCTATTTTGTATATAGGGGTGGGTGAAAAAAT
GCAAGATTTGATAGAATTTAATGCACAAAATTTCTTAGACACACTTTTAGAGGGTGTTTTTGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.244

100

0.444

Multiple sequence alignment