Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   ETT64_RS01530 Genome accession   NZ_CP035435
Coordinates   274439..274990 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm64.3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 269439..279990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT64_RS01530 (ETT64_01530) comX/sigX/comX2/sigX2 274439..274990 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  ETT64_RS01535 (ETT64_01535) truA 275177..275926 (+) 750 WP_002988132.1 tRNA pseudouridine(38-40) synthase TruA -
  ETT64_RS01540 (ETT64_01540) - 275916..276680 (+) 765 WP_002988136.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ETT64_RS01545 (ETT64_01545) - 276670..277140 (+) 471 WP_002988139.1 ECF transporter S component -
  ETT64_RS01550 (ETT64_01550) - 277154..277714 (+) 561 WP_002995157.1 TIGR01440 family protein -
  ETT64_RS01555 (ETT64_01555) - 277779..278624 (-) 846 WP_136293099.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=341422 ETT64_RS01530 WP_010921894.1 274439..274990(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain emm64.3]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=341422 ETT64_RS01530 WP_010921894.1 274439..274990(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain emm64.3]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.