Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   ETT70_RS05275 Genome accession   NZ_CP035429
Coordinates   1006447..1006590 (-) Length   47 a.a.
NCBI ID   WP_136113944.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emmNA     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 998818..1047388 1006447..1006590 within 0


Gene organization within MGE regions


Location: 998818..1047388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT70_RS05240 (ETT70_05230) pfkA 998818..999831 (-) 1014 WP_002984444.1 6-phosphofructokinase -
  ETT70_RS05245 (ETT70_05235) - 999911..1003021 (-) 3111 WP_136275856.1 DNA polymerase III subunit alpha -
  ETT70_RS05250 (ETT70_05240) - 1003206..1003577 (+) 372 WP_002989617.1 GntR family transcriptional regulator -
  ETT70_RS05255 (ETT70_05245) - 1003577..1004275 (+) 699 WP_002984437.1 ABC transporter ATP-binding protein -
  ETT70_RS05260 (ETT70_05250) - 1004285..1005070 (+) 786 WP_002984433.1 hypothetical protein -
  ETT70_RS05265 (ETT70_05255) - 1005197..1005811 (-) 615 WP_002989607.1 TVP38/TMEM64 family protein -
  ETT70_RS05275 (ETT70_05265) prx 1006447..1006590 (-) 144 WP_136113944.1 Paratox Regulator
  ETT70_RS05280 (ETT70_05270) - 1007286..1008494 (-) 1209 WP_136275997.1 glucosaminidase domain-containing protein -
  ETT70_RS05285 (ETT70_05275) - 1008605..1008790 (-) 186 WP_011054731.1 holin -
  ETT70_RS05290 (ETT70_05280) - 1008787..1009083 (-) 297 WP_023078532.1 hypothetical protein -
  ETT70_RS05295 (ETT70_05285) - 1009094..1009705 (-) 612 WP_136275996.1 DUF1366 domain-containing protein -
  ETT70_RS05300 (ETT70_05290) - 1009708..1010139 (-) 432 WP_063632964.1 DUF1617 family protein -
  ETT70_RS05305 (ETT70_05295) - 1010151..1012037 (-) 1887 WP_136059201.1 gp58-like family protein -
  ETT70_RS05310 (ETT70_05300) - 1012047..1013048 (-) 1002 WP_136275995.1 hyaluronoglucosaminidase -
  ETT70_RS05315 (ETT70_05305) - 1013045..1015153 (-) 2109 WP_136275994.1 phage tail spike protein -
  ETT70_RS05320 (ETT70_05310) - 1015150..1015920 (-) 771 WP_136040103.1 distal tail protein Dit -
  ETT70_RS05325 (ETT70_05315) - 1015920..1018667 (-) 2748 WP_136133681.1 phage tail tape measure protein -
  ETT70_RS05330 (ETT70_05320) - 1018668..1018985 (-) 318 WP_136059197.1 hypothetical protein -
  ETT70_RS05335 (ETT70_05325) - 1019006..1019374 (-) 369 WP_136059196.1 tail assembly chaperone -
  ETT70_RS05340 (ETT70_05330) - 1019423..1019953 (-) 531 WP_136059195.1 phage major tail protein, TP901-1 family -
  ETT70_RS05345 (ETT70_05335) - 1019954..1020340 (-) 387 WP_136059194.1 DUF3168 domain-containing protein -
  ETT70_RS05350 (ETT70_05340) - 1020337..1020693 (-) 357 WP_115225223.1 HK97-gp10 family putative phage morphogenesis protein -
  ETT70_RS05355 (ETT70_05345) - 1020693..1020989 (-) 297 WP_002992595.1 hypothetical protein -
  ETT70_RS05360 (ETT70_05350) - 1020986..1021339 (-) 354 WP_002992594.1 phage head-tail connector protein -
  ETT70_RS05365 (ETT70_05355) - 1021349..1021618 (-) 270 WP_136106670.1 HeH/LEM domain-containing protein -
  ETT70_RS05370 (ETT70_05360) - 1021630..1022679 (-) 1050 WP_136040111.1 major capsid protein -
  ETT70_RS05375 (ETT70_05365) - 1022682..1023062 (-) 381 WP_002990036.1 structural protein -
  ETT70_RS05380 (ETT70_05370) - 1023072..1023605 (-) 534 WP_136106671.1 DUF4355 domain-containing protein -
  ETT70_RS09230 - 1023712..1023882 (-) 171 WP_168625199.1 hypothetical protein -
  ETT70_RS05385 (ETT70_05375) - 1023873..1024148 (-) 276 WP_136095084.1 hypothetical protein -
  ETT70_RS05390 (ETT70_05380) - 1024164..1025078 (-) 915 WP_136059192.1 minor capsid protein -
  ETT70_RS05395 (ETT70_05385) - 1025059..1026549 (-) 1491 WP_136059191.1 phage portal protein -
  ETT70_RS05400 (ETT70_05390) - 1026561..1027805 (-) 1245 WP_023611361.1 PBSX family phage terminase large subunit -
  ETT70_RS05405 (ETT70_05395) - 1027802..1028251 (-) 450 WP_281726933.1 hypothetical protein -
  ETT70_RS05410 (ETT70_05400) - 1028301..1028678 (-) 378 WP_032459833.1 ASCH domain-containing protein -
  ETT70_RS05415 (ETT70_05405) - 1028739..1029215 (-) 477 WP_186787913.1 GNAT family N-acetyltransferase -
  ETT70_RS05420 (ETT70_05410) - 1029131..1029808 (-) 678 WP_002986850.1 ABC transporter ATP-binding protein -
  ETT70_RS05425 (ETT70_05415) - 1029787..1030305 (-) 519 WP_136026505.1 ParB N-terminal domain-containing protein -
  ETT70_RS05430 (ETT70_05420) - 1030386..1030643 (+) 258 WP_011054748.1 hypothetical protein -
  ETT70_RS05445 (ETT70_05435) - 1031218..1031655 (-) 438 WP_021340586.1 DUF1492 domain-containing protein -
  ETT70_RS05450 (ETT70_05440) - 1032020..1032313 (-) 294 WP_032460172.1 hypothetical protein -
  ETT70_RS05455 (ETT70_05445) - 1032361..1033125 (-) 765 WP_032463361.1 site-specific DNA-methyltransferase -
  ETT70_RS05460 (ETT70_05450) - 1033115..1033201 (-) 87 Protein_1008 SAM-dependent methyltransferase -
  ETT70_RS05465 (ETT70_05455) - 1033364..1033633 (-) 270 WP_032463364.1 hypothetical protein -
  ETT70_RS09395 (ETT70_05460) - 1033638..1033823 (-) 186 WP_011017985.1 hypothetical protein -
  ETT70_RS05475 (ETT70_05465) - 1033810..1034322 (-) 513 WP_032463367.1 phage protein -
  ETT70_RS05480 (ETT70_05470) - 1034319..1034660 (-) 342 WP_011888757.1 hypothetical protein -
  ETT70_RS05485 (ETT70_05475) - 1034857..1035885 (-) 1029 WP_011888756.1 DUF1351 domain-containing protein -
  ETT70_RS05490 (ETT70_05480) bet 1035895..1036686 (-) 792 WP_002990071.1 phage recombination protein Bet -
  ETT70_RS05495 (ETT70_05485) - 1036689..1037018 (-) 330 WP_085613678.1 hypothetical protein -
  ETT70_RS05500 (ETT70_05490) - 1037040..1037294 (-) 255 WP_136059189.1 hypothetical protein -
  ETT70_RS05505 (ETT70_05495) - 1037281..1037565 (-) 285 WP_227878030.1 hypothetical protein -
  ETT70_RS05510 (ETT70_05500) - 1037769..1038551 (-) 783 WP_136059187.1 ATP-binding protein -
  ETT70_RS05515 (ETT70_05505) - 1038538..1039299 (-) 762 WP_014635613.1 DnaD domain protein -
  ETT70_RS05520 (ETT70_05510) - 1039393..1039530 (-) 138 WP_011017881.1 hypothetical protein -
  ETT70_RS05525 (ETT70_05515) - 1039527..1039823 (-) 297 WP_002984306.1 MerR family transcriptional regulator -
  ETT70_RS09495 (ETT70_05520) - 1039902..1039985 (-) 84 Protein_1022 XRE family transcriptional regulator -
  ETT70_RS05535 (ETT70_05525) - 1040064..1040288 (+) 225 WP_136059186.1 hypothetical protein -
  ETT70_RS05540 (ETT70_05530) - 1040457..1040657 (-) 201 WP_038433319.1 helix-turn-helix domain-containing protein -
  ETT70_RS05545 (ETT70_05535) - 1040731..1041213 (+) 483 WP_023605145.1 hypothetical protein -
  ETT70_RS09235 - 1041210..1041356 (-) 147 WP_168645150.1 hypothetical protein -
  ETT70_RS05550 (ETT70_05540) - 1041413..1042180 (+) 768 WP_136114188.1 hypothetical protein -
  ETT70_RS05555 (ETT70_05545) - 1042314..1042472 (-) 159 WP_085613682.1 hypothetical protein -
  ETT70_RS05560 (ETT70_05550) - 1042531..1042746 (+) 216 WP_014635530.1 hypothetical protein -
  ETT70_RS09240 - 1042732..1042881 (-) 150 WP_168391463.1 hypothetical protein -
  ETT70_RS05565 (ETT70_05555) - 1043234..1044058 (+) 825 WP_136114187.1 helix-turn-helix transcriptional regulator -
  ETT70_RS05570 (ETT70_05560) - 1044243..1045196 (+) 954 WP_136059184.1 Abi family protein -
  ETT70_RS05575 (ETT70_05565) - 1045317..1046405 (+) 1089 WP_023079773.1 site-specific integrase -
  ETT70_RS05580 (ETT70_05570) - 1046768..1047388 (+) 621 WP_002989605.1 DUF3862 domain-containing protein -

Sequence


Protein


Download         Length: 47 a.a.        Molecular weight: 5410.24 Da        Isoelectric Point: 4.0339

>NTDB_id=341119 ETT70_RS05275 WP_136113944.1 1006447..1006590(-) (prx) [Streptococcus pyogenes strain emmNA]
MLTYDEFKQAIDDGYITGDTVMIVRKSGQIFDYVLLGEPVKPWEILT

Nucleotide


Download         Length: 144 bp        

>NTDB_id=341119 ETT70_RS05275 WP_136113944.1 1006447..1006590(-) (prx) [Streptococcus pyogenes strain emmNA]
ATGCTAACATACGACGAGTTTAAGCAAGCTATTGATGACGGATATATCACAGGAGACACGGTTATGATCGTGCGCAAGAG
CGGACAGATTTTTGATTATGTGTTGCTTGGTGAGCCTGTGAAACCGTGGGAAATTTTGACTTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

78.723

100

0.787

  prx Streptococcus pyogenes MGAS315

76.596

100

0.766

  prx Streptococcus pyogenes MGAS8232

76.596

100

0.766

  prx Streptococcus pyogenes MGAS315

83.333

89.362

0.745

  prx Streptococcus pyogenes MGAS315

82.927

87.234

0.723

  prx Streptococcus pyogenes MGAS315

73.913

97.872

0.723

  prx Streptococcus pyogenes MGAS315

70.732

87.234

0.617


Multiple sequence alignment