Detailed information NTG0338478

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: F1D59_RS23325
• Genome accession: NZ_CP043638
• Coordinates: 5225687..5226355 (+)
• Length: 222 a.a.
• NCBI ID: WP_030649987.1
• Uniprot ID: A0ABQ3P0H1
• Organism: Streptomyces sp. INR7
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5220687..5231355

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F1D59_RS23285 (F1D59_23385)	-	5220930..5221385 (+)	456	WP_030650069.1	HD domain-containing protein	-
F1D59_RS23290 (F1D59_23390)	-	5221541..5221735 (+)	195	WP_030008564.1	membrane protein	-
F1D59_RS23295 (F1D59_23395)	-	5221744..5222478 (+)	735	WP_185558515.1	nucleotidyltransferase domain-containing protein	-
F1D59_RS23300 (F1D59_23400)	-	5222492..5222680 (-)	189	WP_185558516.1	hypothetical protein	-
F1D59_RS23315 (F1D59_23415)	tig	5223298..5224692 (+)	1395	WP_030649992.1	trigger factor	-
F1D59_RS23320 (F1D59_23420)	-	5225014..5225631 (+)	618	WP_030649990.1	ATP-dependent Clp protease proteolytic subunit	-
F1D59_RS23325 (F1D59_23425)	clpP	5225687..5226355 (+)	669	WP_030649987.1	ATP-dependent Clp protease proteolytic subunit	Regulator
F1D59_RS23330 (F1D59_23430)	clpX	5226509..5227795 (+)	1287	WP_030649983.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
F1D59_RS23335 (F1D59_23435)	-	5227968..5228243 (+)	276	WP_030649980.1	hypothetical protein	-
F1D59_RS23340 (F1D59_23440)	-	5228289..5229230 (-)	942	WP_030649979.1	hypothetical protein	-

Sequence

Protein

• Length: 222 a.a.
• Molecular weight: 24501.91 Da
• Isoelectric Point: 4.6762

>NTDB_id=338478 F1D59_RS23325 WP_030649987.1 5225687..5226355(+) (clpP) [Streptomyces sp. INR7]
MVNTQMQNNFSASGLYSGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPD
RDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDL
EIAANEILRMRDQLETMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLIDQIISTRKSNKL

Nucleotide

• Length: 669 bp

>NTDB_id=338478 F1D59_RS23325 WP_030649987.1 5225687..5226355(+) (clpP) [Streptomyces sp. INR7]
ATGGTGAACACCCAGATGCAGAACAACTTCTCCGCGAGCGGCCTCTACTCCGGCCCGCAGGTGGACAACCGCTACGTCAT
CCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCT
TCCTCGGCGTGCAGATCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGAC
CGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCGATCTACGACACGATGCAGTTCGT
GAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCCGCCGCCGCCGTCCTGCTCGCCGCGGGTACCCCCGGCA
AGCGCATGGCCCTGCCGAACGCCCGTGTGCTGATCCACCAGCCCTCCGGCGGCACCGGCCGTGAGCAGCTCTCCGACCTG
GAGATCGCGGCCAACGAGATCCTGCGCATGCGCGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACGACGCCGATCGA
GAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTCGCGTACGGCCTGATCGACCAGATCA
TCTCCACCCGCAAGAGCAACAAGCTCTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (36-216)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	52.041	88.288	0.459
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	50	84.685	0.423
clpP	Streptococcus thermophilus LMD-9	46.392	87.387	0.405
clpP	Streptococcus thermophilus LMG 18311	46.392	87.387	0.405
clpP	Streptococcus pyogenes MGAS315	47.368	85.586	0.405
clpP	Streptococcus pyogenes JRS4	47.368	85.586	0.405
clpP	Streptococcus mutans UA159	46.842	85.586	0.401
clpP	Streptococcus pneumoniae Rx1	45.408	88.288	0.401
clpP	Streptococcus pneumoniae D39	45.408	88.288	0.401
clpP	Streptococcus pneumoniae TIGR4	45.408	88.288	0.401
clpP	Streptococcus pneumoniae R6	45.408	88.288	0.401
clpP	Lactococcus lactis subsp. cremoris KW2	45.55	86.036	0.392
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	44.503	86.036	0.383