NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	F0316_RS04615	Genome accession	NZ_CP043554
Coordinates	959056..959682 (+)	Length	208 a.a.
NCBI ID	WP_000121678.1	Uniprot ID	A0AAW4GZF5
Organism	Vibrio cholerae strain RFB16
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 954056..964682

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F0316_RS04600 (F0316_04600)	-	955357..957150 (-)	1794	WP_114794186.1	sensor histidine kinase	-
F0316_RS19840	-	957140..957358 (+)	219	WP_001881672.1	hypothetical protein	-
F0316_RS04610 (F0316_04610)	tig	957649..958950 (+)	1302	WP_001198441.1	trigger factor	-
F0316_RS04615 (F0316_04615)	clpP	959056..959682 (+)	627	WP_000121678.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
F0316_RS04620 (F0316_04620)	clpX	959762..961042 (+)	1281	WP_002044302.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
F0316_RS04625 (F0316_04625)	lon	961165..963525 (+)	2361	WP_001047611.1	endopeptidase La	-
F0316_RS04630 (F0316_04630)	-	963709..963981 (+)	273	WP_001044516.1	HU family DNA-binding protein	-

Sequence

Protein

Download Length: 208 a.a. Molecular weight: 23082.42 Da Isoelectric Point: 5.0426

                                >NTDB_id=338359 F0316_RS04615 WP_000121678.1 959056..959682(+) (clpP) [Vibrio cholerae strain RFB16]

MSYQEKNAMSPIFDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSP

GGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIK

NKLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVEYGLVDAVLKHRGE

Nucleotide

Download Length: 627 bp

                                >NTDB_id=338359 F0316_RS04615 WP_000121678.1 959056..959682(+) (clpP) [Vibrio cholerae strain RFB16]

ATGAGCTACCAAGAAAAAAATGCAATGTCGCCCATTTTTGACGCACTCGTACCTATGGTGGTTGAACAAACCTCTCGTGG

TGAGCGTTCATACGACATCTATTCTCGCTTACTAAAAGAACGAGTGATTTTCTTAACCGGGCAAGTAGAAGATCACATGG

CAAACCTTGTCGTGGCTCAACTGCTTTTCTTAGAATCTGAAAACCCTGATAAAGATATTTTCCTTTACATCAACTCACCC

GGTGGCAGTGTCACTGCAGGGATGTCGATTTACGATACTATGCAGTTCATCAAGCCAAACGTGAGCACAGTGTGTATGGG

ACAAGCCTGTTCAATGGGCGCTTTCTTGCTTGCTGGTGGTGCACCGGGCAAGCGTTATGTACTGCCGAATTCCCGTGTCA

TGATTCACCAACCACTGGGTGGATTCCAAGGCCAAGCCTCTGATATTCAAATTCATGCTCAAGAAATTCTGACCATTAAA

AACAAACTGAACCGTTTGTTGGCAGAACATACAGGCCAGCCAATCGAAGTGATTGAACGCGATACTGATCGTGATAACTT

CATGTCGGCAGATCAAGCAGTGGAATACGGTTTGGTGGATGCGGTGCTGAAACACCGTGGCGAGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0AAW4GZF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	68.947	91.346	0.63
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.684	91.346	0.582
clpP	Streptococcus pneumoniae Rx1	54.167	92.308	0.5
clpP	Streptococcus pneumoniae D39	54.167	92.308	0.5
clpP	Streptococcus pneumoniae R6	54.167	92.308	0.5
clpP	Streptococcus pneumoniae TIGR4	54.167	92.308	0.5
clpP	Streptococcus thermophilus LMG 18311	53.125	92.308	0.49
clpP	Streptococcus thermophilus LMD-9	53.125	92.308	0.49
clpP	Streptococcus mutans UA159	51.813	92.788	0.481
clpP	Lactococcus lactis subsp. cremoris KW2	51.562	92.308	0.476
clpP	Streptococcus pyogenes JRS4	51.562	92.308	0.476
clpP	Streptococcus pyogenes MGAS315	51.562	92.308	0.476
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50	92.308	0.462

Detailed information NTG0338359