Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   EQH41_RS10960 Genome accession   NZ_CP035239
Coordinates   509539..510186 (-) Length   215 a.a.
NCBI ID   WP_078064020.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_TIGR4     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 504539..515186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH41_RS02435 (EQH41_02620) - 504872..505201 (-) 330 WP_000132572.1 hypothetical protein -
  EQH41_RS02440 (EQH41_02625) - 505477..505815 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  EQH41_RS02445 (EQH41_02630) comE/blpR 505820..506557 (+) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  EQH41_RS02450 (EQH41_02635) - 506571..507911 (+) 1341 WP_001017646.1 sensor histidine kinase -
  EQH41_RS02455 (EQH41_02640) blpC 507982..508110 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  EQH41_RS02460 (EQH41_02645) - 508167..509528 (-) 1362 WP_001069075.1 bacteriocin secretion accessory protein -
  EQH41_RS10960 (EQH41_02650) comA/nlmT 509539..510186 (-) 648 WP_078064020.1 ATP-binding cassette domain-containing protein Regulator
  EQH41_RS10965 (EQH41_02655) comA/nlmT 510202..511215 (-) 1014 WP_307772067.1 ABC transporter transmembrane domain-containing protein Regulator
  EQH41_RS10970 (EQH41_02660) comA/nlmT 511109..511696 (-) 588 WP_000205166.1 cysteine peptidase family C39 domain-containing protein Regulator
  EQH41_RS02470 (EQH41_02665) blpI 511978..512175 (+) 198 WP_001093259.1 bacteriocin-like peptide BlpI -
  EQH41_RS02475 (EQH41_02675) blpJ 512642..512911 (+) 270 WP_001093248.1 bacteriocin-like peptide BlpJ -
  EQH41_RS02480 (EQH41_02680) blpU 512980..513210 (+) 231 WP_000379967.1 bacteriocin-like peptide BlpU -
  EQH41_RS02485 (EQH41_02685) - 513213..513332 (+) 120 WP_000346296.1 PncF family bacteriocin immunity protein -
  EQH41_RS02490 (EQH41_02690) - 513629..513793 (+) 165 WP_000727118.1 hypothetical protein -
  EQH41_RS02495 (EQH41_02695) - 513790..514194 (+) 405 WP_000846943.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23976.78 Da        Isoelectric Point: 9.2946

>NTDB_id=337022 EQH41_RS10960 WP_078064020.1 509539..510186(-) (comA/nlmT) [Streptococcus pneumoniae strain TVO_TIGR4]
MNLTIKQGDKVSLVGVSGSGKTTLAKMIVNFFEPYKGHISINHQDIKNIDKKVLRRHINYLPQQAYIFNGSILENLTLGG
NHMISQEDILKACEVAEIRQDIERMPMGYQTQLSDGAGLSGGQKQRIALARALLTKSPVLILDEATSGLDVLTEKKVIDN
LMSLTDKTILFVAHRLSIAERTNRVIVLDQGKIIEVGSHQELMQAQGFYHHLFNK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=337022 EQH41_RS10960 WP_078064020.1 509539..510186(-) (comA/nlmT) [Streptococcus pneumoniae strain TVO_TIGR4]
ATTAATCTCACGATTAAACAAGGAGATAAGGTTAGCCTAGTTGGAGTTAGTGGTTCTGGTAAAACAACTTTAGCCAAAAT
GATTGTCAATTTCTTTGAACCCTACAAAGGGCATATTTCCATCAATCATCAGGATATTAAAAACATTGATAAAAAAGTCT
TGCGCCGTCATATTAATTACCTACCCCAACAAGCCTATATCTTTAATGGCTCTATTTTGGAAAACTTAACCTTGGGCGGT
AATCATATGATTAGTCAAGAAGATATTCTAAAAGCTTGTGAAGTAGCTGAAATCCGTCAAGACATTGAAAGAATGCCTAT
GGGCTATCAAACTCAGCTCTCTGATGGAGCTGGTCTATCAGGAGGACAGAAGCAACGAATCGCTCTCGCTCGTGCTCTTT
TAACTAAATCTCCTGTTTTAATACTAGATGAAGCTACTAGCGGTCTTGATGTCTTGACTGAGAAAAAGGTTATAGATAAT
CTTATGTCTCTAACTGATAAAACCATTCTCTTTGTAGCCCATCGTCTCAGTATAGCCGAACGAACCAACCGTGTCATTGT
TCTTGACCAGGGGAAAATCATTGAAGTTGGTAGTCACCAAGAGTTAATGCAGGCGCAAGGTTTCTACCATCATCTATTCA
ATAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(1-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

71.495

99.535

0.712
  comA Streptococcus mitis NCTC 12261

66.977

100

0.67
  comA Streptococcus pneumoniae Rx1

66.512

100

0.665
  comA Streptococcus pneumoniae D39

66.512

100

0.665
  comA Streptococcus pneumoniae R6

66.512

100

0.665
  comA Streptococcus mitis SK321

66.512

100

0.665
  comA Streptococcus pneumoniae TIGR4

66.047

100

0.66
  comA Streptococcus gordonii str. Challis substr. CH1

66.047

100

0.66
  rcrQ Streptococcus mutans UA159

38.679

98.605

0.381

Multiple sequence alignment