Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SEQ_RS09395 Genome accession   NC_012471
Coordinates   1925347..1927323 (-) Length   658 a.a.
NCBI ID   WP_042357209.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi 4047     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1920347..1932323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEQ_RS09375 (SEQ_1915) amiF 1920863..1921786 (-) 924 WP_012680088.1 ATP-binding cassette domain-containing protein Regulator
  SEQ_RS09380 (SEQ_1916) amiE 1921779..1922849 (-) 1071 WP_012680089.1 ABC transporter ATP-binding protein Regulator
  SEQ_RS09385 (SEQ_1917) amiD 1922858..1923784 (-) 927 WP_012680090.1 oligopeptide ABC transporter permease OppC Regulator
  SEQ_RS09390 (SEQ_1918) amiC 1923784..1925283 (-) 1500 WP_012680091.1 ABC transporter permease Regulator
  SEQ_RS09395 (SEQ_1919) amiA3 1925347..1927323 (-) 1977 WP_042357209.1 peptide ABC transporter substrate-binding protein Regulator
  SEQ_RS09400 (SEQ_1920) pbp3 1927631..1928869 (+) 1239 WP_012680093.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SEQ_RS09405 (SEQ_1921) pbp3 1929191..1930426 (+) 1236 WP_012680094.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SEQ_RS09410 (SEQ_1922) - 1930510..1931691 (+) 1182 WP_012680095.1 serine hydrolase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72806.29 Da        Isoelectric Point: 5.3484

>NTDB_id=33547 SEQ_RS09395 WP_042357209.1 1925347..1927323(-) (amiA3) [Streptococcus equi subsp. equi 4047]
MKKSKWLATLGVAALSVSILAACGNSSSKSSESKIYSYVYSSDPSTLDYISTSKATTNDITTNAVDGLLENDQYGNLIPS
LAKDWKVSKDGLTYTYTLRDGIKWYTSDGEEYADVTAEDFVAGVKHAADVNSDALYIIQDSIKGLSDYLNGKTKDFSTVG
VKALDKKTVQYTLNQPESFWNSKLTYSVLAPVNADFLKSKGKDFGKATDPSSILYNGPFLITALTSKSSIELVKNENYWD
AKNVHLDGVQLTFYDGQDQESLFRNFDDGAYSAARLFPTTPSYKTVKKKYGDSITYGQQNATLYYAAFNLNRTSYNHTKK
TSDSQKSDTQKAILNKDFRQAMTFAFDRIAYQAQSAGEDAANKSLRSTLVPPTFVKIGDKNFGDVVEEHLVTYGSQWENV
NLDDAQDGLYNPEKAKASFEKAKAALQAEGVQFPIHLDYPMDQTATVLLQQARSMKQSIEKTLGTDNVVIDIIELQKDVY
ENISYLAETPAQNDWDISTASGWGPDYVDPSSYLDIFNPTLANSQTKSIGLEPGKDLAIASAAGLDEFTKLVTEAGKITD
DLNARYTLYAKAQAALTDSAIYIPTISLGGTPRVTKVVPFSGAFAWAGTKNDFYYKYVKLQDKPVTAKQYDKALAEWKKE
KKKSNEKYNNSLEKHIEK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=33547 SEQ_RS09395 WP_042357209.1 1925347..1927323(-) (amiA3) [Streptococcus equi subsp. equi 4047]
ATGAAGAAAAGTAAATGGTTGGCAACGCTGGGTGTCGCAGCGCTGTCGGTGTCCATCCTGGCAGCCTGTGGAAACAGCTC
AAGTAAAAGCAGTGAATCAAAGATTTATAGCTATGTCTATTCTAGTGATCCAAGTACTTTAGACTATATCAGTACAAGTA
AAGCAACAACAAATGACATAACAACAAATGCTGTTGATGGGCTTTTGGAAAATGACCAATATGGGAATTTAATCCCCTCT
CTTGCTAAGGATTGGAAGGTCTCAAAGGACGGCTTGACCTATACCTACACGCTTCGTGATGGGATTAAGTGGTACACATC
TGATGGAGAAGAGTATGCAGATGTGACAGCTGAGGATTTTGTAGCTGGAGTAAAGCACGCAGCAGATGTTAACTCTGATG
CCCTATATATCATTCAGGACTCTATTAAAGGCTTAAGCGATTACTTGAACGGTAAGACCAAGGACTTTTCAACCGTAGGT
GTCAAAGCGCTTGACAAAAAAACAGTTCAGTACACCCTTAATCAACCAGAAAGCTTCTGGAATTCAAAGCTAACCTATAG
TGTCCTAGCTCCGGTAAATGCTGACTTCTTAAAATCAAAGGGCAAGGATTTTGGTAAGGCAACAGATCCATCATCTATCC
TGTATAATGGTCCATTTCTTATCACAGCTTTGACAAGCAAATCCTCTATCGAGCTTGTCAAAAACGAAAATTATTGGGAC
GCTAAGAATGTTCACCTTGATGGTGTTCAATTGACCTTTTACGATGGACAGGATCAGGAGTCATTGTTTAGAAACTTTGA
TGACGGTGCTTACTCAGCAGCGAGATTATTCCCAACAACACCTTCTTATAAAACTGTTAAGAAAAAATATGGAGACAGCA
TCACTTACGGACAACAAAATGCTACTCTCTACTATGCGGCGTTTAACCTAAATCGTACGTCTTACAACCACACTAAGAAG
ACCTCAGATAGCCAAAAATCAGATACCCAAAAGGCTATCTTAAACAAGGATTTCCGTCAGGCTATGACATTTGCCTTTGA
TAGAATTGCTTATCAGGCGCAATCAGCAGGTGAAGATGCAGCTAACAAATCGCTTCGTAGCACACTTGTGCCACCGACAT
TTGTGAAAATTGGCGACAAAAACTTTGGTGATGTTGTTGAGGAGCACTTGGTGACCTATGGTAGCCAGTGGGAAAATGTA
AATCTAGATGATGCACAGGATGGCTTGTACAATCCTGAAAAGGCAAAAGCATCATTTGAAAAAGCAAAAGCAGCCCTACA
AGCTGAGGGTGTACAGTTCCCAATCCATCTTGATTACCCAATGGATCAAACTGCAACGGTGCTCTTACAGCAGGCTCGCT
CTATGAAGCAGTCAATTGAGAAAACATTAGGAACTGACAATGTTGTGATTGATATTATTGAGCTTCAGAAAGATGTTTAT
GAAAATATTAGTTATCTCGCCGAAACTCCTGCTCAAAATGACTGGGATATTTCAACGGCTTCTGGCTGGGGACCTGATTA
TGTCGACCCATCGTCATATCTTGATATTTTCAACCCAACGCTTGCAAACTCACAAACAAAATCAATTGGACTTGAGCCAG
GTAAGGATTTGGCCATTGCTAGTGCAGCTGGCTTAGACGAATTTACAAAGCTAGTGACAGAGGCAGGCAAGATTACTGAT
GATCTCAACGCCCGCTACACGCTCTATGCTAAGGCTCAAGCGGCATTGACAGACTCTGCTATTTACATCCCGACTATTTC
ACTTGGTGGAACACCACGTGTAACTAAAGTGGTACCGTTTTCAGGCGCCTTTGCTTGGGCTGGTACTAAAAATGACTTTT
ATTACAAATACGTCAAGCTACAAGATAAGCCTGTAACTGCTAAACAATATGACAAAGCATTAGCCGAGTGGAAAAAAGAA
AAGAAAAAATCTAACGAAAAATATAATAATTCCCTCGAGAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

56.667

100

0.568
  amiA3 Streptococcus thermophilus LMD-9

56.515

100

0.567
  amiA Streptococcus salivarius strain HSISS4

56.297

100

0.564

Multiple sequence alignment