Detailed information NTG0033543

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: SEQ_RS09375
• Genome accession: NC_012471
• Coordinates: 1920863..1921786 (-)
• Length: 307 a.a.
• NCBI ID: WP_012680088.1
• Uniprot ID: C0M8B8
• Organism: Streptococcus equi subsp. equi 4047
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1915863..1926786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SEQ_RS09375 (SEQ_1915)	amiF	1920863..1921786 (-)	924	WP_012680088.1	ATP-binding cassette domain-containing protein	Regulator
SEQ_RS09380 (SEQ_1916)	amiE	1921779..1922849 (-)	1071	WP_012680089.1	ABC transporter ATP-binding protein	Regulator
SEQ_RS09385 (SEQ_1917)	amiD	1922858..1923784 (-)	927	WP_012680090.1	oligopeptide ABC transporter permease OppC	Regulator
SEQ_RS09390 (SEQ_1918)	amiC	1923784..1925283 (-)	1500	WP_012680091.1	ABC transporter permease	Regulator

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34714.94 Da
• Isoelectric Point: 6.9308

>NTDB_id=33543 SEQ_RS09375 WP_012680088.1 1920863..1921786(-) (amiF) [Streptococcus equi subsp. equi 4047]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSSGEIRYDGKIINGKKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEDERKEKIKQMMSEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMDPEFVIADEPISALDVSVRAQVLNLLKKIQSEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFV
NPVHPYTKSLLSAVPIPDPILERQKKLVVYHPEQHDYSVDKPSMVEIKPNHFVWANQVEAERYRKEL

Nucleotide

• Length: 924 bp

>NTDB_id=33543 SEQ_RS09375 WP_012680088.1 1920863..1921786(-) (amiF) [Streptococcus equi subsp. equi 4047]
ATGTCTGAAAAATTAGTTGAAGTAAAAGACCTGGAGATTTCCTTTGGAGAGGGAAAGAAAAAGTTTGTTGCCGTTAAAAA
TGCCAATTTCTTTATCAATAAAGGAGAAACCTTTTCTCTTGTTGGAGAATCAGGCAGTGGAAAGACAACAATCGGTCGTG
CCATCATTGGTTTAAATGAGACAAGTTCAGGCGAAATCCGCTATGATGGTAAGATTATTAATGGTAAAAAATCAAAATCT
GAAGCTAATGAACTGATTAGAAAAATCCAAATGATTTTTCAGGATCCAGCAGCCAGCCTGAATGAGCGTGCAACGGTTGA
TTATATCATCTCAGAAGGCCTTTATAATTTTAACCTATTCAAGACAGAAGATGAACGTAAAGAAAAAATTAAACAGATGA
TGTCAGAGGTGGGCTTGCTTGCAGAGCACCTGACACGCTACCCTCATGAGTTTTCAGGTGGGCAGCGTCAGCGTATAGGC
ATTGCAAGAGCGCTTGTAATGGATCCGGAGTTTGTTATTGCTGATGAGCCGATTTCAGCTCTTGATGTATCTGTTCGTGC
CCAAGTCTTGAATCTGTTGAAGAAAATACAGTCTGAAAAAGGCTTGACCTATTTATTCATTGCTCATGATTTATCGGTTG
TGCGTTTTATTTCAGATCGTATTGCTGTTATTCACAAAGGAGTAATTGTTGAAGTCGCCGAAACAGAAGAGCTTTTTGTT
AACCCTGTTCACCCTTATACCAAATCTCTGCTGTCAGCAGTACCAATTCCAGATCCCATTTTAGAGCGTCAAAAGAAATT
GGTGGTTTATCATCCAGAGCAGCATGACTATTCTGTTGACAAGCCATCAATGGTGGAAATCAAACCAAATCACTTCGTCT
GGGCTAACCAGGTGGAAGCGGAGCGTTACCGCAAAGAGCTTTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (25-178)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

3D structure

• AlphaFold DB: C0M8B8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	83.007	99.674	0.827
amiF	Streptococcus thermophilus LMD-9	82.68	99.674	0.824
amiF	Streptococcus salivarius strain HSISS4	82.353	99.674	0.821