Detailed information NTG0033545

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: SEQ_RS09385
• Genome accession: NC_012471
• Coordinates: 1922858..1923784 (-)
• Length: 308 a.a.
• NCBI ID: WP_012680090.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. equi 4047
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1917858..1928784

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SEQ_RS09375 (SEQ_1915)	amiF	1920863..1921786 (-)	924	WP_012680088.1	ATP-binding cassette domain-containing protein	Regulator
SEQ_RS09380 (SEQ_1916)	amiE	1921779..1922849 (-)	1071	WP_012680089.1	ABC transporter ATP-binding protein	Regulator
SEQ_RS09385 (SEQ_1917)	amiD	1922858..1923784 (-)	927	WP_012680090.1	oligopeptide ABC transporter permease OppC	Regulator
SEQ_RS09390 (SEQ_1918)	amiC	1923784..1925283 (-)	1500	WP_012680091.1	ABC transporter permease	Regulator
SEQ_RS09395 (SEQ_1919)	amiA3	1925347..1927323 (-)	1977	WP_042357209.1	peptide ABC transporter substrate-binding protein	Regulator

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34559.48 Da
• Isoelectric Point: 7.9346

>NTDB_id=33545 SEQ_RS09385 WP_012680090.1 1922858..1923784(-) (amiD) [Streptococcus equi subsp. equi 4047]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTILMLVILIAIILMSFIYPMFANYDFGNVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVIVGGIWGVSKAVDKVMIEVYNIISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTPTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=33545 SEQ_RS09385 WP_012680090.1 1922858..1923784(-) (amiD) [Streptococcus equi subsp. equi 4047]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTAGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTATTTAGACAATTTTTCTCACGTAAATCAACTATTTTGATGCTGGTTATTTTGATTGCTATTA
TTTTGATGAGCTTCATCTACCCTATGTTTGCCAACTATGACTTTGGTAACGTGAGCAATATTAATGATTTTTCAAAACGT
TATATAGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGCGTTTGGTATGGTGC
TAGAAATTCAATCTTAATTTCAGTTATTGCAACCATCATCAATATGATTATCGGAGTCATTGTCGGTGGTATTTGGGGTG
TTTCCAAAGCAGTTGATAAGGTAATGATTGAGGTGTATAATATCATCTCTAACCTGCCGCAAATGCTCATTATCATTGTG
TTGACTTATTCTATCGGAGCAGGCTTTTGGAACTTGATTTTTGCTTTTTGTGTGACAGGCTGGATTGGGATTGCTTATTC
GATTCGTGTACAAATTTTGCGTTATCGTGATTTAGAATACAATTTAGCAAGTCAGACCTTAGGAACACCCACCCATAAAA
TTGTCATTAAAAATCTTTTACCTCAATTGGTTTCGGTGATCGTTTCGATGGTTTCCTTGCTATTGCCGTCCTATATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGCTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTGATTTCAAATTATTC
AAACAATTTAACAACAAATGCCTATTTATTCTGGATTCCATTGACAACTCTTATTCTTGTTTCCCTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-75)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus salivarius strain HSISS4	75	100	0.75
amiD	Streptococcus thermophilus LMG 18311	74.351	100	0.744
amiD	Streptococcus thermophilus LMD-9	74.351	100	0.744