Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SEQ_RS09380 Genome accession   NC_012471
Coordinates   1921779..1922849 (-) Length   356 a.a.
NCBI ID   WP_012680089.1    Uniprot ID   C0M8B9
Organism   Streptococcus equi subsp. equi 4047     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1916779..1927849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEQ_RS09375 (SEQ_1915) amiF 1920863..1921786 (-) 924 WP_012680088.1 ATP-binding cassette domain-containing protein Regulator
  SEQ_RS09380 (SEQ_1916) amiE 1921779..1922849 (-) 1071 WP_012680089.1 ABC transporter ATP-binding protein Regulator
  SEQ_RS09385 (SEQ_1917) amiD 1922858..1923784 (-) 927 WP_012680090.1 oligopeptide ABC transporter permease OppC Regulator
  SEQ_RS09390 (SEQ_1918) amiC 1923784..1925283 (-) 1500 WP_012680091.1 ABC transporter permease Regulator
  SEQ_RS09395 (SEQ_1919) amiA3 1925347..1927323 (-) 1977 WP_042357209.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39704.83 Da        Isoelectric Point: 6.1118

>NTDB_id=33544 SEQ_RS09380 WP_012680089.1 1921779..1922849(-) (amiE) [Streptococcus equi subsp. equi 4047]
MTEKQEIILSAKNIVVEFDVRDRVLTAIRDVSLDLYKGEVLAVVGESGSGKSVLTKTFTGMLEANGRVASGTITYAGQEL
TELKNHKDWEAIRGSKIATIFQDPMTSLDPIQTIGSQITEVIVKHQKKSRSEAKALAIDYMTRVGIPEPEKRFGEYPFQY
SGGMRQRIVIAIALACKPDILICDEPTTALDVTIQAQIIDLLKTLQKEYHFTIIFITHDLGVVASIADKVAVMYAGEIIE
YGKVEEIFYDPRHPYTWSLLSSLPQLADEKGVLFSIPGAPPSLYKPIVGDAFAPRSQYAMAIDFEETVPRFTISDTHWAK
TWLLHPDAPKVQKPAVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=33544 SEQ_RS09380 WP_012680089.1 1921779..1922849(-) (amiE) [Streptococcus equi subsp. equi 4047]
ATGACTGAAAAACAAGAAATTATATTAAGTGCTAAAAATATTGTTGTAGAGTTTGATGTGCGTGATCGTGTACTGACCGC
TATTCGTGATGTTTCTCTTGATTTGTATAAGGGAGAGGTATTGGCTGTTGTTGGTGAGTCAGGCTCTGGCAAGTCTGTTT
TAACTAAGACATTTACAGGAATGCTGGAGGCAAATGGACGTGTTGCTTCAGGGACGATAACCTATGCAGGTCAAGAACTA
ACAGAGCTTAAAAATCATAAGGACTGGGAAGCTATTCGCGGCTCTAAAATTGCCACTATCTTTCAGGACCCAATGACTAG
TCTAGATCCGATTCAAACGATTGGCAGCCAGATTACTGAGGTTATTGTTAAGCATCAGAAAAAATCTAGATCAGAGGCTA
AGGCTTTAGCAATCGACTATATGACAAGGGTCGGTATTCCTGAGCCAGAAAAGCGTTTTGGAGAGTATCCTTTCCAATAT
TCTGGCGGTATGAGACAGCGTATTGTTATTGCCATTGCCCTAGCTTGTAAGCCAGATATTCTGATCTGTGATGAGCCGAC
AACAGCTCTTGACGTTACCATCCAGGCTCAGATTATTGACCTATTAAAGACGCTTCAAAAAGAGTATCACTTCACCATTA
TCTTTATCACGCATGACCTAGGAGTGGTTGCAAGTATTGCTGATAAGGTTGCTGTTATGTACGCAGGGGAGATTATTGAA
TACGGAAAGGTTGAGGAAATCTTCTATGATCCTCGTCACCCCTACACATGGAGCTTATTATCTAGCCTACCGCAATTGGC
AGATGAAAAGGGCGTTCTGTTTTCAATTCCAGGGGCACCTCCGTCCCTATACAAGCCAATTGTTGGTGATGCCTTTGCGC
CACGCTCTCAGTATGCTATGGCCATTGATTTTGAAGAAACAGTTCCTCGTTTTACGATCAGTGACACGCACTGGGCAAAA
ACCTGGCTCCTACACCCAGATGCTCCTAAGGTTCAAAAACCAGCTGTTATTCAGGATTTACACCAAAAAATATTGAAAAA
AATGTCACGCCAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0M8B9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

79.722

100

0.806
  amiE Streptococcus thermophilus LMG 18311

78.611

100

0.795
  amiE Streptococcus thermophilus LMD-9

78.611

100

0.795
  oppD Streptococcus mutans UA159

56.156

93.539

0.525

Multiple sequence alignment