Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   SEQ_RS08425 Genome accession   NC_012471
Coordinates   1742042..1742227 (-) Length   61 a.a.
NCBI ID   WP_012679954.1    Uniprot ID   C0M6G1
Organism   Streptococcus equi subsp. equi 4047     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1742042..1772823 1742042..1742227 within 0


Gene organization within MGE regions


Location: 1742042..1772823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEQ_RS08425 (SEQ_1726) prx 1742042..1742227 (-) 186 WP_012679954.1 hypothetical protein Regulator
  SEQ_RS08430 (SEQ_1727) spel 1742349..1743137 (-) 789 WP_012679955.1 streptococcal pyrogenic exotoxin SpeL -
  SEQ_RS08435 (SEQ_1728) spek 1743404..1744183 (-) 780 WP_012679956.1 streptococcal pyrogenic exotoxin SpeK -
  SEQ_RS08440 (SEQ_1729) - 1744308..1745537 (-) 1230 WP_012679957.1 glucosaminidase domain-containing protein -
  SEQ_RS08445 (SEQ_1730) - 1745649..1745828 (-) 180 WP_012679339.1 holin -
  SEQ_RS08450 (SEQ_1731) - 1745831..1746121 (-) 291 WP_012679338.1 hypothetical protein -
  SEQ_RS08455 (SEQ_1732) - 1746134..1746748 (-) 615 WP_012679958.1 DUF1366 domain-containing protein -
  SEQ_RS08460 (SEQ_1733) - 1746751..1747182 (-) 432 WP_012679959.1 DUF1617 family protein -
  SEQ_RS08465 (SEQ_1734) - 1747191..1749095 (-) 1905 WP_012679960.1 gp58-like family protein -
  SEQ_RS08470 (SEQ_1735) - 1749106..1749720 (-) 615 WP_012679961.1 hypothetical protein -
  SEQ_RS08475 (SEQ_1736) - 1749722..1750429 (-) 708 WP_012679962.1 collagen-like protein -
  SEQ_RS08480 (SEQ_1737) - 1750429..1752486 (-) 2058 WP_012679963.1 phage tail spike protein -
  SEQ_RS08485 (SEQ_1738) - 1752483..1753262 (-) 780 WP_012679964.1 distal tail protein Dit -
  SEQ_RS08490 (SEQ_1739) - 1753294..1756548 (-) 3255 WP_012679965.1 tape measure protein -
  SEQ_RS08495 (SEQ_1740) - 1756565..1756861 (-) 297 WP_230197423.1 hypothetical protein -
  SEQ_RS08500 (SEQ_1741) - 1756936..1757295 (-) 360 WP_012679967.1 tail assembly chaperone -
  SEQ_RS08505 (SEQ_1743) - 1757357..1757882 (-) 526 Protein_1634 phage major tail protein, TP901-1 family -
  SEQ_RS08510 (SEQ_1744) - 1757958..1758347 (-) 390 WP_012679970.1 hypothetical protein -
  SEQ_RS08515 (SEQ_1745) - 1758344..1758709 (-) 366 WP_012679971.1 HK97-gp10 family putative phage morphogenesis protein -
  SEQ_RS08520 (SEQ_1746) - 1758690..1758998 (-) 309 WP_012679972.1 hypothetical protein -
  SEQ_RS08525 (SEQ_1747) - 1758995..1759348 (-) 354 WP_012679973.1 phage head-tail connector protein -
  SEQ_RS08530 (SEQ_1748) - 1759358..1759624 (-) 267 WP_012679974.1 HeH/LEM domain-containing protein -
  SEQ_RS08535 (SEQ_1749) - 1759635..1760684 (-) 1050 WP_012679975.1 major capsid protein -
  SEQ_RS08540 (SEQ_1750) - 1760687..1761067 (-) 381 WP_012679976.1 head decoration protein -
  SEQ_RS08545 (SEQ_1751) - 1761078..1761701 (-) 624 WP_042357153.1 DUF4355 domain-containing protein -
  SEQ_RS11620 (SEQ_1752) - 1761883..1762050 (-) 168 WP_012679978.1 hypothetical protein -
  SEQ_RS08550 (SEQ_1753) - 1762086..1762355 (-) 270 WP_012679979.1 hypothetical protein -
  SEQ_RS08555 (SEQ_1755) - 1762552..1762971 (-) 420 WP_012679981.1 HD domain-containing protein -
  SEQ_RS08560 (SEQ_1756) - 1762968..1763174 (-) 207 WP_003052398.1 hypothetical protein -
  SEQ_RS08565 (SEQ_1757) - 1763176..1764753 (-) 1578 WP_042357165.1 phage head morphogenesis protein -
  SEQ_RS08570 (SEQ_1758) - 1764734..1766236 (-) 1503 WP_012679983.1 phage portal protein -
  SEQ_RS08575 (SEQ_1759) - 1766248..1767495 (-) 1248 WP_012679984.1 PBSX family phage terminase large subunit -
  SEQ_RS08590 (SEQ_1762) - 1769086..1769874 (+) 789 WP_012679985.1 helix-turn-helix transcriptional regulator -
  SEQ_RS08595 (SEQ_1763) - 1769883..1771052 (+) 1170 WP_012679986.1 DUF4041 domain-containing protein -
  SEQ_RS08600 (SEQ_1764) - 1771055..1771258 (+) 204 WP_012679987.1 hypothetical protein -
  SEQ_RS08605 (SEQ_1765) - 1771390..1772823 (+) 1434 WP_012679988.1 recombinase family protein -

Sequence

Protein


Download         Length: 61 a.a.        Molecular weight: 6981.00 Da        Isoelectric Point: 3.8428

>NTDB_id=33535 SEQ_RS08425 WP_012679954.1 1742042..1742227(-) (prx) [Streptococcus equi subsp. equi 4047]
MLTYEEFKQAIDHGYITGDVVMIVRKNGQIFDYVLPGEEVQPWEVVTVEAVADILNELQII

Nucleotide


Download         Length: 186 bp        

>NTDB_id=33535 SEQ_RS08425 WP_012679954.1 1742042..1742227(-) (prx) [Streptococcus equi subsp. equi 4047]
ATGCTAACATACGAGGAATTTAAGCAAGCTATTGATCATGGATATATCACAGGAGACGTGGTCATGATCGTGCGTAAAAA
CGGACAGATATTTGATTATGTGTTGCCAGGGGAGGAAGTGCAGCCTTGGGAAGTGGTGACAGTCGAGGCAGTTGCTGATA
TTTTAAACGAATTACAAATTATTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0M6G1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

74.138

95.082

0.705
  prx Streptococcus pyogenes MGAS315

69.492

96.721

0.672
  prx Streptococcus pyogenes MGAS8232

69.492

96.721

0.672
  prx Streptococcus pyogenes MGAS315

67.241

95.082

0.639
  prx Streptococcus pyogenes MGAS315

83.333

68.852

0.574
  prx Streptococcus pyogenes MGAS315

82.927

67.213

0.557
  prx Streptococcus pyogenes MGAS315

70.732

67.213

0.475

Multiple sequence alignment