Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   SZO_RS00660 Genome accession   NC_012470
Coordinates   117673..118707 (+) Length   344 a.a.
NCBI ID   WP_228274883.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 112673..123707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SZO_RS00640 (SZO_00960) - 113060..113425 (+) 366 WP_012677230.1 DUF1033 family protein -
  SZO_RS00645 (SZO_00970) - 113970..115973 (+) 2004 WP_012677231.1 DUF1430 domain-containing protein -
  SZO_RS00650 (SZO_00980) - 115975..116622 (+) 648 WP_012677232.1 ATP-binding cassette domain-containing protein -
  SZO_RS00655 (SZO_00990) comGA/cglA 116802..117740 (+) 939 WP_012677233.1 competence type IV pilus ATPase ComGA Machinery gene
  SZO_RS00660 (SZO_01000) comYB 117673..118707 (+) 1035 WP_228274883.1 competence type IV pilus assembly protein ComGB Machinery gene
  SZO_RS00665 (SZO_01010) comGC/cglC 118708..119031 (+) 324 WP_012677235.1 competence type IV pilus major pilin ComGC Machinery gene
  SZO_RS00670 (SZO_01020) comGD 119009..119434 (+) 426 WP_012514783.1 competence type IV pilus minor pilin ComGD -
  SZO_RS00675 (SZO_01030) comGE 119439..119681 (+) 243 WP_012677236.1 competence type IV pilus minor pilin ComGE -
  SZO_RS00680 (SZO_01040) comYF 119668..120102 (+) 435 WP_012677237.1 competence type IV pilus minor pilin ComGF Machinery gene
  SZO_RS00685 (SZO_01050) comGG 120080..120442 (+) 363 WP_012677238.1 competence type IV pilus minor pilin ComGG -
  SZO_RS00690 (SZO_01060) comYH 120504..121457 (+) 954 WP_012677239.1 class I SAM-dependent methyltransferase Machinery gene
  SZO_RS00695 (SZO_01070) - 121517..122716 (+) 1200 WP_012677240.1 acetate kinase -
  SZO_RS00700 (SZO_01080) - 123085..123699 (-) 615 WP_012677241.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39498.69 Da        Isoelectric Point: 9.3195

>NTDB_id=33440 SZO_RS00660 WP_228274883.1 117673..118707(+) (comYB) [Streptococcus equi subsp. zooepidemicus]
MISFLQRDISIPSRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLVFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLLLSLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQHMGDVF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=33440 SZO_RS00660 WP_228274883.1 117673..118707(+) (comYB) [Streptococcus equi subsp. zooepidemicus]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATACCAAGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAGGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGACTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATCATACTTTTGGTTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGCTTTTGTCTGCTTTTGCTGTCGCTGATTGGCTCTTTTTACCTATATGCCAGATCTTG
TAGTCGGCTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTAAGCCTAATGATTGAATATGGTGACATCAAATCAAAGCTTGGTCAGGAATTAGATATCT
ATTCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTTAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)

Type II secretion system (T2SS), protein F (T2SSF)

(29-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.277

98.547

0.535
  comYB Streptococcus mutans UA159

54.277

98.547

0.535
  comYB Streptococcus gordonii str. Challis substr. CH1

52.353

98.837

0.517
  comGB/cglB Streptococcus mitis SK321

48.348

96.802

0.468
  comGB/cglB Streptococcus mitis NCTC 12261

47.904

97.093

0.465
  comGB/cglB Streptococcus pneumoniae Rx1

47.748

96.802

0.462
  comGB/cglB Streptococcus pneumoniae D39

47.748

96.802

0.462
  comGB/cglB Streptococcus pneumoniae R6

47.748

96.802

0.462
  comGB/cglB Streptococcus pneumoniae TIGR4

47.748

96.802

0.462
  comGB Lactococcus lactis subsp. cremoris KW2

46.018

98.547

0.453

Multiple sequence alignment