Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   SZO_RS00680 Genome accession   NC_012470
Coordinates   119668..120102 (+) Length   144 a.a.
NCBI ID   WP_012677237.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 114668..125102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SZO_RS00650 (SZO_00980) - 115975..116622 (+) 648 WP_012677232.1 ATP-binding cassette domain-containing protein -
  SZO_RS00655 (SZO_00990) comGA/cglA 116802..117740 (+) 939 WP_012677233.1 competence type IV pilus ATPase ComGA Machinery gene
  SZO_RS00660 (SZO_01000) comYB 117673..118707 (+) 1035 WP_228274883.1 competence type IV pilus assembly protein ComGB Machinery gene
  SZO_RS00665 (SZO_01010) comGC/cglC 118708..119031 (+) 324 WP_012677235.1 competence type IV pilus major pilin ComGC Machinery gene
  SZO_RS00670 (SZO_01020) comGD 119009..119434 (+) 426 WP_012514783.1 competence type IV pilus minor pilin ComGD -
  SZO_RS00675 (SZO_01030) comGE 119439..119681 (+) 243 WP_012677236.1 competence type IV pilus minor pilin ComGE -
  SZO_RS00680 (SZO_01040) comYF 119668..120102 (+) 435 WP_012677237.1 competence type IV pilus minor pilin ComGF Machinery gene
  SZO_RS00685 (SZO_01050) comGG 120080..120442 (+) 363 WP_012677238.1 competence type IV pilus minor pilin ComGG -
  SZO_RS00690 (SZO_01060) comYH 120504..121457 (+) 954 WP_012677239.1 class I SAM-dependent methyltransferase Machinery gene
  SZO_RS00695 (SZO_01070) - 121517..122716 (+) 1200 WP_012677240.1 acetate kinase -
  SZO_RS00700 (SZO_01080) - 123085..123699 (-) 615 WP_012677241.1 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16155.70 Da        Isoelectric Point: 10.1988

>NTDB_id=33442 SZO_RS00680 WP_012677237.1 119668..120102(+) (comYF) [Streptococcus equi subsp. zooepidemicus]
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMVSERYLAANDQDNWLLFSQQLRAELSGTTLQGVSNNRLYVEKDK
KTLSFGQVKSHDFRKAAGNGRGYQPMLFGLSSSQITAVGQQVIIKLKWQSGLERTFIYAFQEKG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=33442 SZO_RS00680 WP_012677237.1 119668..120102(+) (comYF) [Streptococcus equi subsp. zooepidemicus]
TTGAAAGACAGTAGGTTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACCAAGAGCCTTATGGTGAGTGAGAGGTATCTAGCAGCAAATGATCAGGACAACTGGCTTTTGTTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCTTACAGGGTGTCTCCAATAATAGGCTATATGTTGAGAAAGACAAG
AAAACTCTGTCCTTTGGACAGGTCAAAAGCCATGATTTTAGAAAAGCAGCTGGCAATGGTCGAGGCTATCAGCCCATGCT
GTTTGGCTTGTCAAGTAGCCAAATAACAGCAGTAGGTCAGCAGGTTATCATCAAGCTGAAATGGCAAAGCGGCTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(41-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

52.083

100

0.521
  comYF Streptococcus mutans UA159

51.389

100

0.514
  comGF/cglF Streptococcus mitis SK321

50.365

95.139

0.479
  comGF/cglF Streptococcus mitis NCTC 12261

49.635

95.139

0.472
  comGF Lactococcus lactis subsp. cremoris KW2

47.143

97.222

0.458
  comGF/cglF Streptococcus pneumoniae D39

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae R6

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae TIGR4

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae Rx1

48.175

95.139

0.458

Multiple sequence alignment