Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SZO_RS00690 | Genome accession | NC_012470 |
| Coordinates | 120504..121457 (+) | Length | 317 a.a. |
| NCBI ID | WP_012677239.1 | Uniprot ID | - |
| Organism | Streptococcus equi subsp. zooepidemicus | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 115504..126457
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SZO_RS00650 (SZO_00980) | - | 115975..116622 (+) | 648 | WP_012677232.1 | ATP-binding cassette domain-containing protein | - |
| SZO_RS00655 (SZO_00990) | comGA/cglA | 116802..117740 (+) | 939 | WP_012677233.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SZO_RS00660 (SZO_01000) | comYB | 117673..118707 (+) | 1035 | WP_228274883.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SZO_RS00665 (SZO_01010) | comGC/cglC | 118708..119031 (+) | 324 | WP_012677235.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SZO_RS00670 (SZO_01020) | comGD | 119009..119434 (+) | 426 | WP_012514783.1 | competence type IV pilus minor pilin ComGD | - |
| SZO_RS00675 (SZO_01030) | comGE | 119439..119681 (+) | 243 | WP_012677236.1 | competence type IV pilus minor pilin ComGE | - |
| SZO_RS00680 (SZO_01040) | comYF | 119668..120102 (+) | 435 | WP_012677237.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SZO_RS00685 (SZO_01050) | comGG | 120080..120442 (+) | 363 | WP_012677238.1 | competence type IV pilus minor pilin ComGG | - |
| SZO_RS00690 (SZO_01060) | comYH | 120504..121457 (+) | 954 | WP_012677239.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SZO_RS00695 (SZO_01070) | - | 121517..122716 (+) | 1200 | WP_012677240.1 | acetate kinase | - |
| SZO_RS00700 (SZO_01080) | - | 123085..123699 (-) | 615 | WP_012677241.1 | hypothetical protein | - |
| SZO_RS00705 (SZO_01090) | - | 124222..126264 (+) | 2043 | WP_012677242.1 | BglG family transcription antiterminator | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35658.61 Da Isoelectric Point: 4.7613
>NTDB_id=33443 SZO_RS00690 WP_012677239.1 120504..121457(+) (comYH) [Streptococcus equi subsp. zooepidemicus]
MNFEKIEQAYELILENSQLIENDLKTHIYDAIVEQNSFYLGAQGASPQVAKNIETLKALQLTKEEWRQAYQFVLIKAGKT
EPLQANHQFTPDAIGFIMLYILETLSSQESLDVLEIGSGTGNLAHTILNHSHQAIHYLGVELDDLLIDLSASIAEIMGSS
AQFIQEDAVRPQLLKESDMIISDLPVGFYPNDDIASRYQVASSDEHTYAHHLLMEQALKYLKKDGFAIFLAPVNLLSSPQ
SHLLKQWLKGYAQVAALITLPEAVFGNPANAKSIIVLCKQSNRFAETFVYPISDLKSVDNVRDFMENFKNWKRDNVI
MNFEKIEQAYELILENSQLIENDLKTHIYDAIVEQNSFYLGAQGASPQVAKNIETLKALQLTKEEWRQAYQFVLIKAGKT
EPLQANHQFTPDAIGFIMLYILETLSSQESLDVLEIGSGTGNLAHTILNHSHQAIHYLGVELDDLLIDLSASIAEIMGSS
AQFIQEDAVRPQLLKESDMIISDLPVGFYPNDDIASRYQVASSDEHTYAHHLLMEQALKYLKKDGFAIFLAPVNLLSSPQ
SHLLKQWLKGYAQVAALITLPEAVFGNPANAKSIIVLCKQSNRFAETFVYPISDLKSVDNVRDFMENFKNWKRDNVI
Nucleotide
Download Length: 954 bp
>NTDB_id=33443 SZO_RS00690 WP_012677239.1 120504..121457(+) (comYH) [Streptococcus equi subsp. zooepidemicus]
ATGAATTTTGAAAAGATTGAACAAGCCTATGAGCTTATATTAGAAAATAGCCAGCTGATTGAAAATGATTTAAAAACGCA
TATCTATGATGCTATTGTTGAGCAGAATTCTTTTTATCTGGGAGCCCAAGGAGCAAGCCCTCAGGTTGCTAAAAATATTG
AGACGTTGAAGGCCTTGCAGTTAACCAAGGAGGAGTGGCGCCAGGCTTATCAGTTTGTTTTGATCAAGGCTGGGAAAACA
GAGCCATTACAGGCCAACCACCAATTTACCCCAGACGCGATCGGCTTTATCATGCTTTATATTTTGGAGACCTTGAGCTC
ACAAGAGTCACTTGATGTGCTTGAGATTGGCAGTGGGACAGGCAATCTGGCTCACACCATTTTAAACCATTCACACCAAG
CGATTCATTATTTAGGGGTTGAGCTTGATGATTTATTAATTGATCTATCCGCTAGTATTGCTGAAATCATGGGGTCATCA
GCCCAGTTTATTCAAGAGGATGCTGTCAGACCTCAGCTGTTAAAGGAAAGTGATATGATCATTAGTGATTTGCCAGTTGG
CTTTTATCCTAACGATGATATTGCCAGCAGGTATCAGGTGGCTAGCTCAGATGAGCATACCTATGCCCATCATTTACTGA
TGGAGCAGGCCTTAAAGTACCTGAAAAAAGATGGCTTTGCTATTTTCTTAGCACCGGTAAATCTTTTGAGCAGCCCACAA
AGTCACCTCTTAAAACAATGGCTGAAGGGCTATGCTCAGGTTGCGGCCTTGATTACTTTGCCTGAGGCTGTGTTTGGAAA
TCCAGCTAATGCAAAATCGATTATTGTTCTTTGTAAGCAATCGAATCGCTTTGCAGAAACCTTTGTTTACCCCATTAGTG
ATTTGAAATCTGTTGATAATGTTCGTGATTTTATGGAAAACTTCAAAAATTGGAAACGGGATAATGTTATTTAA
ATGAATTTTGAAAAGATTGAACAAGCCTATGAGCTTATATTAGAAAATAGCCAGCTGATTGAAAATGATTTAAAAACGCA
TATCTATGATGCTATTGTTGAGCAGAATTCTTTTTATCTGGGAGCCCAAGGAGCAAGCCCTCAGGTTGCTAAAAATATTG
AGACGTTGAAGGCCTTGCAGTTAACCAAGGAGGAGTGGCGCCAGGCTTATCAGTTTGTTTTGATCAAGGCTGGGAAAACA
GAGCCATTACAGGCCAACCACCAATTTACCCCAGACGCGATCGGCTTTATCATGCTTTATATTTTGGAGACCTTGAGCTC
ACAAGAGTCACTTGATGTGCTTGAGATTGGCAGTGGGACAGGCAATCTGGCTCACACCATTTTAAACCATTCACACCAAG
CGATTCATTATTTAGGGGTTGAGCTTGATGATTTATTAATTGATCTATCCGCTAGTATTGCTGAAATCATGGGGTCATCA
GCCCAGTTTATTCAAGAGGATGCTGTCAGACCTCAGCTGTTAAAGGAAAGTGATATGATCATTAGTGATTTGCCAGTTGG
CTTTTATCCTAACGATGATATTGCCAGCAGGTATCAGGTGGCTAGCTCAGATGAGCATACCTATGCCCATCATTTACTGA
TGGAGCAGGCCTTAAAGTACCTGAAAAAAGATGGCTTTGCTATTTTCTTAGCACCGGTAAATCTTTTGAGCAGCCCACAA
AGTCACCTCTTAAAACAATGGCTGAAGGGCTATGCTCAGGTTGCGGCCTTGATTACTTTGCCTGAGGCTGTGTTTGGAAA
TCCAGCTAATGCAAAATCGATTATTGTTCTTTGTAAGCAATCGAATCGCTTTGCAGAAACCTTTGTTTACCCCATTAGTG
ATTTGAAATCTGTTGATAATGTTCGTGATTTTATGGAAAACTTCAAAAATTGGAAACGGGATAATGTTATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
62.342 |
99.685 |
0.621 |
| comYH | Streptococcus mutans UA140 |
62.342 |
99.685 |
0.621 |