Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FRD49_RS17405 Genome accession   NZ_CP042994
Coordinates   3626641..3628128 (+) Length   495 a.a.
NCBI ID   WP_032011646.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain J1A     
Function   promote branch migration (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3621641..3633128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRD49_RS17380 (FRD49_17380) ribD 3622558..3623643 (-) 1086 WP_032011644.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  FRD49_RS17385 (FRD49_17385) nrdR 3623659..3624117 (-) 459 WP_004710970.1 transcriptional regulator NrdR -
  FRD49_RS17390 (FRD49_17390) - 3624278..3625672 (-) 1395 WP_032011645.1 ammonium transporter -
  FRD49_RS17395 (FRD49_17395) glnK 3625730..3626068 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  FRD49_RS17400 (FRD49_17400) - 3626348..3626575 (+) 228 WP_002048939.1 accessory factor UbiK family protein -
  FRD49_RS17405 (FRD49_17405) comM 3626641..3628128 (+) 1488 WP_032011646.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FRD49_RS17410 (FRD49_17410) - 3628158..3629582 (-) 1425 WP_032011647.1 PLP-dependent aminotransferase family protein -
  FRD49_RS17415 (FRD49_17415) - 3629694..3630470 (+) 777 WP_032011648.1 aldolase -
  FRD49_RS17420 (FRD49_17420) - 3630486..3631364 (+) 879 WP_032011649.1 dihydrodipicolinate synthase family protein -
  FRD49_RS17425 (FRD49_17425) - 3631407..3632228 (-) 822 WP_032011650.1 TorF family putative porin -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54606.53 Da        Isoelectric Point: 7.5370

>NTDB_id=334014 FRD49_RS17405 WP_032011646.1 3626641..3628128(+) (comM) [Acinetobacter nosocomialis strain J1A]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPISGALTLAMACQQAQHKIVLPQDNSQDISHLPNLECYPVSHL
KEVCEHFLGNTKLSQVQSSSRSNDIPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHIFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQIKRQNCLNQALSPKQLEQFAVLDDTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLSQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=334014 FRD49_RS17405 WP_032011646.1 3626641..3628128(+) (comM) [Acinetobacter nosocomialis strain J1A]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGCTTACATGCGCCTCTCATTGAAGTAGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTAACGATCGTAGGGCTTGCTGAAGCAGCAGTCAGGGAGAGTAAGGACAGGGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAGTTTCCGACTAAACGGCTGACTATTAATCTTGCTCCCGCAGATTTGCCCAAAGATGGTTCACGT
TTAGATTTACCGATTGCATTAGGGATATTAATTGCCTCAGGTCAGCTTCCAGAGAACTGCACTGAAGACTTTGAATTTAT
TGGAGAGTTAGCACTAGATGGTCATGTAAGACCTATTTCAGGTGCTTTAACTTTGGCAATGGCCTGCCAACAAGCCCAGC
ATAAAATTGTTTTACCCCAAGATAATAGTCAAGATATTAGTCATTTACCAAATCTTGAGTGTTATCCGGTTAGTCATTTA
AAAGAAGTTTGTGAACACTTTTTAGGAAATACCAAGCTATCTCAGGTGCAATCATCTTCCCGCTCAAATGACATACCGTA
TAAATTTGACCTTGCTGATGTAAAAGGTCAGCTACGTCCACGTCGTGCACTGGAAATTGCAGCTGCTGGAGGGCACTCCC
TGCTCTTTAAAGGACCACCGGGTACAGGTAAGACTTTACTCGCCTCACGTCTTCCTTCAATTTTACCACCACTTTCTACT
CAAGAAACGCTTGAAGTTGCGAGTATTTATTCGATTTCAAATACACCGCATATTTTTGGACAGCGCCCTTTTCGTGCACC
CCACCATACAGCCTCAGCAATTGCACTAGTTGGGGGCGGCTCGCATCCTAAACCGGGTGAAATTACCTTATCTCACTTAG
GGGTTCTCTTTTTAGATGAATTACCCGAGTTTGATCGCAAAGTATTAGAAGTCTTACGCCAGCCGCTTGAGTCAAAAGAA
ATTATCATTTCACGGGCAGCCCGGCAAATTACCTATCCTGCCAACTTTCAGCTTATAGCAGCAATGAACCCCTGCCCATG
TGGTTACGCATTTAATCAAGACAGTCGTTGTCAGTGTTCACCCGAAAGTATTAAGCGCTATCAAAATCGTATATCGGGAC
CATTACTTGACCGCATCGATTTACATATCGATGTACCGCCATTAAAAGCTCAGGAACTACAAGACCCAACACCTGCTGAG
GATTCGACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATAAAAAGGCAGAATTGTTTAAATCAAGCGCT
TTCACCAAAACAATTAGAACAATTCGCTGTCCTAGATGACACTTCACAGCGAATGATTGAAATGGCACAGCAACGTTTAA
ATCTATCAGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGTCTCAAAGTGAGATGATTCAA
AGTCCTCACCTTACAGAAGCTCTCTCCTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

77.576

100

0.776
  comM Glaesserella parasuis strain SC1401

50.699

100

0.513
  comM Vibrio cholerae O1 biovar El Tor strain E7946

51.21

100

0.513
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Haemophilus influenzae Rd KW20

49.098

100

0.495
  comM Legionella pneumophila str. Paris

48.193

100

0.485
  comM Legionella pneumophila strain ERS1305867

48.193

100

0.485
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.211

100

0.479
  comM Helicobacter pylori 26695

37.573

100

0.388