Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FWK61_RS07960 Genome accession   NZ_CP042992
Coordinates   1745968..1746549 (+) Length   193 a.a.
NCBI ID   WP_012341086.1    Uniprot ID   B0UW20
Organism   Histophilus somni strain UOC-KLM-ATR-013     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1740968..1751549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK61_RS07945 (FWK61_07945) - 1741517..1742776 (+) 1260 WP_132994681.1 HlyC/CorC family transporter -
  FWK61_RS07950 (FWK61_07950) pilB 1742810..1744201 (-) 1392 WP_101812545.1 GspE/PulE family protein Machinery gene
  FWK61_RS07955 (FWK61_07955) tig 1744584..1745882 (+) 1299 WP_011609585.1 trigger factor -
  FWK61_RS07960 (FWK61_07960) clpP 1745968..1746549 (+) 582 WP_012341086.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  FWK61_RS07965 (FWK61_07965) clpX 1746565..1747809 (+) 1245 WP_075293630.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  FWK61_RS07970 (FWK61_07970) ilvD 1748208..1750043 (-) 1836 WP_132995301.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21396.66 Da        Isoelectric Point: 6.1020

>NTDB_id=333869 FWK61_RS07960 WP_012341086.1 1745968..1746549(+) (clpP) [Histophilus somni strain UOC-KLM-ATR-013]
MSVIPMVVEQTSRGERSYDIYSRLLKERVIFLTGEVEDRMANLIVAQLLFLEAEDPAKDINIYINSPGGSVTAGMAIYDT
MQFIKPNVRTLCIGQACSMGAFLLAGGTAGKRAALPHARVMIHQPLGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQ
SIEQIEQDTDRDNFMSAEQAKLYGLVDDVLIKR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=333869 FWK61_RS07960 WP_012341086.1 1745968..1746549(+) (clpP) [Histophilus somni strain UOC-KLM-ATR-013]
ATGAGCGTCATTCCTATGGTCGTAGAACAAACATCAAGAGGCGAACGATCTTATGATATTTATTCACGTCTATTAAAAGA
GCGGGTGATTTTTCTGACTGGAGAAGTTGAAGATCGTATGGCAAACTTGATTGTTGCTCAACTTCTCTTTTTGGAAGCGG
AAGATCCAGCAAAAGACATTAATATTTATATAAACTCTCCCGGCGGTTCAGTCACTGCCGGAATGGCAATTTATGATACT
ATGCAATTTATTAAGCCTAATGTGAGAACTCTTTGTATTGGACAAGCATGTTCAATGGGAGCATTTTTATTGGCGGGTGG
CACAGCAGGTAAAAGGGCGGCATTGCCTCATGCAAGAGTGATGATTCATCAGCCTTTAGGTGGCTTTAGAGGACAAGCCT
CTGATATTCAAATTCATGCACAAGAAATTTTAAAAATTAAGCAGACGTTAAATGAACGTTTAGCATTTCATACAGGACAA
TCTATTGAACAAATTGAACAAGATACTGATCGTGATAATTTTATGTCTGCAGAACAGGCAAAATTGTACGGTTTAGTTGA
TGACGTGTTAATTAAACGGTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0UW20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

66.316

98.446

0.653
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.138

97.927

0.648
  clpP Streptococcus pneumoniae D39

54.737

98.446

0.539
  clpP Streptococcus pneumoniae R6

54.737

98.446

0.539
  clpP Streptococcus pneumoniae TIGR4

54.737

98.446

0.539
  clpP Streptococcus thermophilus LMD-9

54.737

98.446

0.539
  clpP Streptococcus pyogenes JRS4

54.737

98.446

0.539
  clpP Streptococcus pyogenes MGAS315

54.737

98.446

0.539
  clpP Streptococcus thermophilus LMG 18311

54.737

98.446

0.539
  clpP Streptococcus pneumoniae Rx1

54.737

98.446

0.539
  clpP Streptococcus mutans UA159

54.45

98.964

0.539
  clpP Lactococcus lactis subsp. cremoris KW2

53.158

98.446

0.523
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.105

98.446

0.513