Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   CA898_RS09270 Genome accession   NZ_CP042901
Coordinates   1960625..1961281 (+) Length   218 a.a.
NCBI ID   WP_000611336.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN061762     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1955625..1966281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA898_RS09240 (CA898_009360) dcyD 1956505..1957491 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  CA898_RS09245 (CA898_009365) tcyL 1957506..1958174 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  CA898_RS09250 (CA898_009370) tcyN 1958171..1958923 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  CA898_RS09255 (CA898_009375) sdiA 1959153..1959875 (+) 723 WP_001154281.1 transcriptional regulator SdiA -
  CA898_RS09260 (CA898_009380) yecF 1959942..1960166 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  CA898_RS09265 (CA898_009385) yecU 1960153..1960329 (-) 177 WP_000590347.1 protein YecU -
  CA898_RS24170 (CA898_009390) - 1960367..1960483 (-) 117 WP_001302039.1 hypothetical protein -
  CA898_RS09270 (CA898_009395) letA 1960625..1961281 (+) 657 WP_000611336.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  CA898_RS09275 (CA898_009400) uvrC 1961278..1963110 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  CA898_RS09280 (CA898_009405) pgsA 1963167..1963715 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CA898_RS09300 (CA898_009430) - 1964412..1965152 (-) 741 WP_032236380.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23878.58 Da        Isoelectric Point: 6.6397

>NTDB_id=332891 CA898_RS09270 WP_000611336.1 1960625..1961281(+) (letA) [Escherichia coli strain CFSAN061762]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITNGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=332891 CA898_RS09270 WP_000611336.1 1960625..1961281(+) (letA) [Escherichia coli strain CFSAN061762]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCTGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAATGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486

Multiple sequence alignment