Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EHW89_RS07315 Genome accession   NZ_CP034543
Coordinates   1496006..1497985 (-) Length   659 a.a.
NCBI ID   WP_126467588.1    Uniprot ID   A0A3Q9F4Q4
Organism   Streptococcus periodonticum strain KCOM 2412     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1491006..1502985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHW89_RS07295 (EHW89_07295) amiF 1491198..1492121 (-) 924 WP_126467586.1 ATP-binding cassette domain-containing protein Regulator
  EHW89_RS07300 (EHW89_07300) amiE 1492132..1493199 (-) 1068 WP_004224088.1 ABC transporter ATP-binding protein Regulator
  EHW89_RS07305 (EHW89_07305) amiD 1493208..1494134 (-) 927 WP_003026180.1 oligopeptide ABC transporter permease OppC Regulator
  EHW89_RS07310 (EHW89_07310) amiC 1494134..1495630 (-) 1497 WP_022525149.1 ABC transporter permease Regulator
  EHW89_RS07315 (EHW89_07315) amiA3 1496006..1497985 (-) 1980 WP_126467588.1 peptide ABC transporter substrate-binding protein Regulator
  EHW89_RS07320 (EHW89_07320) amiA3 1498182..1500158 (-) 1977 WP_106382433.1 peptide ABC transporter substrate-binding protein Regulator
  EHW89_RS07325 (EHW89_07325) - 1500323..1501006 (-) 684 WP_126468093.1 B3/4 domain-containing protein -
  EHW89_RS07330 (EHW89_07330) - 1501240..1502850 (-) 1611 WP_126467591.1 CTP synthase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73163.72 Da        Isoelectric Point: 7.3314

>NTDB_id=331797 EHW89_RS07315 WP_126467588.1 1496006..1497985(-) (amiA3) [Streptococcus periodonticum strain KCOM 2412]
MKKSKIITLAALALLATGTLAACSSSKTGSGNKTFSYIYEQDPDNLNYLTTGKAATANLTSNVIDGLLENDRYGNLVSSV
AKDWTVSKDGLTYTYTLRKGVKWYTSEGEEYAEVKAQDFVTGLKYAADNKSDAIYLVQDSVKGLDAYMKGENKDFSSVGI
KAVDDYTVQYTLNRPESFWNSKTTMGVLAPVNAEFLKSKGNKFAQATDPSSLLYNGPYLLKSITAKSSVEFAKNPNYWDK
KNVHIDNIKLSYYDGQDQDKLAKGFSDGSFTNAKVFPTSPSYASVSKKYKNNIVYTPQDATTYLVATNIDRQSYNHTSKT
TDAQKTSTKKALLNKDFRQAITFAFDRTAYASQVNGKDGATKILRNLFVPPTFVQTDDKSFGELVKEKLVGYDESWKDVN
LNDAQDGLYNPTKAKEKLAKAKAALQADGVQFPIHIDMPVDQTATNKVQRVQSLKQSIEKNLGKENVVIDIQQMSKDDVN
NITYFAESAAAEDWDLSDNVGWSPDFQDPSTYLDVIKPSSGESTKTYLGFDAGTNNAAAAQVGMNEYEKLLNEAEKETTN
TNARYEKYAAAQAWLTDNALVIPTTTLTGRPILSRTVPFTNPFAWSGNKGNSEIILYKYLELQDEPVTQDQYKKAMTKWN
KERSKSNKKAQEELADHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=331797 EHW89_RS07315 WP_126467588.1 1496006..1497985(-) (amiA3) [Streptococcus periodonticum strain KCOM 2412]
ATGAAGAAAAGTAAAATCATTACCCTAGCAGCGCTAGCCTTGCTTGCAACAGGAACCCTAGCAGCTTGTTCTAGCTCTAA
AACAGGCTCAGGGAACAAAACATTCTCATATATTTATGAGCAAGATCCAGATAACCTGAACTATTTGACAACTGGGAAAG
CAGCTACTGCAAATCTTACCAGTAATGTCATTGACGGACTCTTGGAAAATGACCGTTACGGAAATCTAGTTTCTTCTGTG
GCGAAGGATTGGACAGTCTCCAAGGACGGCTTGACTTATACTTATACACTTCGTAAGGGTGTGAAGTGGTACACATCAGA
GGGCGAAGAGTATGCAGAAGTTAAGGCACAAGACTTTGTGACAGGCTTAAAATATGCTGCGGATAATAAATCTGATGCTA
TTTACTTGGTGCAAGATTCTGTTAAAGGCTTGGATGCTTACATGAAGGGTGAAAATAAAGATTTCTCTTCTGTCGGTATC
AAAGCAGTTGATGATTACACGGTTCAATACACGCTTAATCGACCAGAAAGCTTTTGGAATTCTAAAACAACAATGGGCGT
TCTAGCACCAGTTAATGCAGAATTTTTGAAATCAAAAGGCAATAAATTTGCACAAGCAACAGACCCATCTAGTCTTCTTT
ATAATGGTCCATACTTGCTGAAATCTATCACAGCGAAATCGTCTGTTGAATTTGCTAAAAATCCAAACTACTGGGATAAG
AAAAATGTGCACATTGACAACATCAAGCTGTCTTACTATGATGGTCAAGACCAAGACAAACTTGCTAAAGGATTTAGTGA
TGGCTCATTTACCAATGCTAAAGTATTTCCAACTAGCCCAAGTTATGCTTCTGTCAGCAAGAAATACAAAAACAACATCG
TTTATACTCCACAAGATGCAACGACTTACTTAGTAGCTACAAATATTGATCGTCAATCTTACAATCACACTTCAAAGACA
ACAGATGCTCAAAAAACTTCTACTAAGAAAGCTTTGCTAAACAAGGATTTCCGTCAAGCGATTACCTTTGCATTTGACCG
CACTGCTTATGCATCACAGGTGAATGGTAAAGACGGTGCGACGAAGATACTCCGTAATCTCTTTGTACCGCCAACGTTTG
TTCAAACAGATGACAAGAGCTTTGGAGAATTAGTCAAAGAAAAATTAGTTGGTTATGATGAAAGTTGGAAAGATGTCAAC
TTAAATGATGCGCAAGATGGTCTTTACAATCCAACTAAAGCTAAAGAAAAATTAGCGAAAGCGAAAGCAGCGCTTCAAGC
AGACGGCGTTCAATTCCCAATCCACATTGATATGCCAGTTGACCAAACAGCAACTAATAAAGTTCAACGTGTGCAATCAT
TGAAACAATCTATTGAAAAAAATCTTGGGAAAGAAAATGTTGTGATTGATATTCAACAAATGTCTAAAGACGACGTGAAT
AATATCACTTACTTTGCCGAATCCGCAGCGGCAGAAGATTGGGATCTTTCTGATAATGTTGGTTGGAGTCCAGACTTCCA
AGACCCATCTACCTATCTTGATGTTATCAAACCTTCAAGCGGTGAAAGCACTAAGACTTATCTAGGATTTGATGCAGGCA
CGAACAACGCTGCTGCAGCACAAGTTGGTATGAACGAATATGAAAAGTTGTTGAATGAAGCTGAAAAAGAAACCACTAAT
ACGAATGCACGCTATGAAAAATATGCTGCAGCCCAAGCTTGGTTGACTGATAATGCTTTGGTTATTCCGACAACAACCTT
GACTGGTCGTCCAATTCTTTCTCGCACAGTGCCATTTACTAATCCATTTGCTTGGTCAGGAAACAAAGGGAATAGTGAAA
TCATTCTATATAAATATCTTGAACTCCAAGATGAGCCCGTTACACAAGATCAGTACAAGAAAGCTATGACTAAATGGAAT
AAAGAGCGATCAAAATCTAATAAAAAGGCTCAAGAAGAACTTGCAGATCATGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9F4Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

60.606

100

0.607
  amiA3 Streptococcus thermophilus LMG 18311

60

100

0.601
  amiA Streptococcus salivarius strain HSISS4

59.848

100

0.599

Multiple sequence alignment