Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   EHW89_RS07310 Genome accession   NZ_CP034543
Coordinates   1494134..1495630 (-) Length   498 a.a.
NCBI ID   WP_022525149.1    Uniprot ID   A0AAI9J6M6
Organism   Streptococcus periodonticum strain KCOM 2412     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489134..1500630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHW89_RS07285 (EHW89_07285) - 1489192..1490157 (+) 966 WP_003026172.1 LacI family DNA-binding transcriptional regulator -
  EHW89_RS07290 (EHW89_07290) - 1490231..1491055 (-) 825 WP_117644841.1 Cof-type HAD-IIB family hydrolase -
  EHW89_RS07295 (EHW89_07295) amiF 1491198..1492121 (-) 924 WP_126467586.1 ATP-binding cassette domain-containing protein Regulator
  EHW89_RS07300 (EHW89_07300) amiE 1492132..1493199 (-) 1068 WP_004224088.1 ABC transporter ATP-binding protein Regulator
  EHW89_RS07305 (EHW89_07305) amiD 1493208..1494134 (-) 927 WP_003026180.1 oligopeptide ABC transporter permease OppC Regulator
  EHW89_RS07310 (EHW89_07310) amiC 1494134..1495630 (-) 1497 WP_022525149.1 ABC transporter permease Regulator
  EHW89_RS07315 (EHW89_07315) amiA3 1496006..1497985 (-) 1980 WP_126467588.1 peptide ABC transporter substrate-binding protein Regulator
  EHW89_RS07320 (EHW89_07320) amiA3 1498182..1500158 (-) 1977 WP_106382433.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55876.03 Da        Isoelectric Point: 10.0583

>NTDB_id=331796 EHW89_RS07310 WP_022525149.1 1494134..1495630(-) (amiC) [Streptococcus periodonticum strain KCOM 2412]
MKKYIFMRILRSLVSIFMVTTLTYTIIYTMVPRKLIFKQDPNYNKIATTPDKKANYENTIFERMGYIDYYDTKELQEKAS
KENSSVTVEPTNANKKIYEAYIKKLGRGWKLQQFKESKQFYATREVPVYERVLGFYGNLIQIDHTGAVKDASNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPYIHQNFVRLNLGISYPTYANLPVLQVISQGQGQTKTSEVQFPTGKKTSSV
NIYTRTYKSPKQADARDVANYGKDDPYTATESNYQYPSMIVSSSIVGLIGLALSYLIAVPLGSYMARFKNTLFDSISTGA
LTFLMSLPTIALVYIIRLIGSAIGLPDSFPILGAGDWRSYVLPAVILGLLSAPWTAVWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSSIPNSVIGVITGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCLSIFALLLGD
ILMTVLDPRIKLTSKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=331796 EHW89_RS07310 WP_022525149.1 1494134..1495630(-) (amiC) [Streptococcus periodonticum strain KCOM 2412]
ATGAAGAAATATATTTTTATGCGTATCTTACGCTCTTTAGTATCTATTTTCATGGTAACAACGCTGACTTACACCATTAT
CTATACCATGGTGCCTAGGAAGTTGATTTTCAAACAGGACCCAAACTATAACAAAATAGCGACAACTCCTGATAAAAAAG
CCAATTACGAAAATACGATTTTTGAGCGTATGGGTTACATTGACTACTATGATACGAAGGAATTACAAGAAAAAGCTAGT
AAAGAGAATTCCTCTGTAACAGTAGAACCTACTAATGCAAATAAAAAAATCTATGAAGCTTACATCAAAAAGCTGGGACG
CGGTTGGAAATTGCAGCAATTTAAAGAAAGCAAGCAATTTTATGCAACTCGTGAAGTTCCAGTCTATGAACGCGTTCTTG
GTTTCTATGGTAATTTGATTCAAATTGACCATACCGGTGCTGTGAAAGATGCTTCTAATCCGAACTTGAAGCGATATATT
CGCATTGAAAACGATCCTGCTATTGGTTGGTCTGTTGTTGGTTCTGGAACGAAACATAAATATTTATTGTACTTCAATAG
TCAGTTTCCATATATCCACCAAAATTTTGTGAGATTAAATCTGGGAATCTCCTATCCAACCTATGCCAATCTTCCTGTTT
TACAGGTTATTTCACAAGGGCAAGGTCAAACAAAAACATCAGAAGTTCAATTCCCAACAGGAAAGAAAACTTCATCTGTT
AATATTTATACGCGTACATATAAGTCTCCAAAACAAGCTGATGCACGCGATGTTGCTAATTACGGAAAAGATGACCCTTA
TACGGCAACAGAGAGCAATTATCAATATCCATCGATGATTGTGAGCTCTTCTATTGTTGGTTTGATTGGATTGGCTTTGT
CTTACTTAATTGCCGTTCCACTTGGATCTTATATGGCTCGCTTTAAAAATACGTTATTTGATAGTATTTCAACCGGTGCA
TTGACTTTCTTGATGTCACTGCCAACTATTGCTTTAGTTTATATCATTCGGCTGATCGGTTCGGCAATTGGCTTGCCTGA
TTCATTCCCTATTTTGGGAGCAGGTGATTGGCGCTCTTATGTGCTGCCGGCAGTCATTCTTGGACTCTTGAGTGCGCCTT
GGACAGCAGTGTGGATTCGCCGTTATATGATTGACTTGCAATCACAAGATTTTGTTCGTTTTGCACGTGCAAAAGGTCTT
TCTGAAAAAGAAATTTCTAATAAACATATTTTCAAAAATGCCATGGTGCCACTTGTATCCAGCATTCCAAACTCAGTTAT
TGGGGTTATTACAGGTGCAACTTTGACTGAAACAGTCTTTGCTTTCCCTGGTATGGGTAAGATGTTGATTGACTCTGTTA
AAGCTTCAAACAATTCTATGGTCGTTGGTCTTGTCTTTATCTTTACTTGTCTTTCTATCTTCGCTCTTCTATTGGGTGAT
ATTCTGATGACAGTACTTGACCCACGTATTAAATTAACATCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

80.12

100

0.801
  amiC Streptococcus thermophilus LMG 18311

79.719

100

0.797
  amiC Streptococcus thermophilus LMD-9

79.518

100

0.795

Multiple sequence alignment