Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EHW89_RS07320 Genome accession   NZ_CP034543
Coordinates   1498182..1500158 (-) Length   658 a.a.
NCBI ID   WP_106382433.1    Uniprot ID   -
Organism   Streptococcus periodonticum strain KCOM 2412     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1493182..1505158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHW89_RS07305 (EHW89_07305) amiD 1493208..1494134 (-) 927 WP_003026180.1 oligopeptide ABC transporter permease OppC Regulator
  EHW89_RS07310 (EHW89_07310) amiC 1494134..1495630 (-) 1497 WP_022525149.1 ABC transporter permease Regulator
  EHW89_RS07315 (EHW89_07315) amiA3 1496006..1497985 (-) 1980 WP_126467588.1 peptide ABC transporter substrate-binding protein Regulator
  EHW89_RS07320 (EHW89_07320) amiA3 1498182..1500158 (-) 1977 WP_106382433.1 peptide ABC transporter substrate-binding protein Regulator
  EHW89_RS07325 (EHW89_07325) - 1500323..1501006 (-) 684 WP_126468093.1 B3/4 domain-containing protein -
  EHW89_RS07330 (EHW89_07330) - 1501240..1502850 (-) 1611 WP_126467591.1 CTP synthase -
  EHW89_RS07335 (EHW89_07335) rpoE 1503034..1503621 (-) 588 WP_003031757.1 DNA-directed RNA polymerase subunit delta -
  EHW89_RS07340 (EHW89_07340) tig 1503859..1505142 (-) 1284 WP_003031722.1 trigger factor -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72493.08 Da        Isoelectric Point: 6.6800

>NTDB_id=331798 EHW89_RS07320 WP_106382433.1 1498182..1500158(-) (amiA3) [Streptococcus periodonticum strain KCOM 2412]
MKKSKIIAVAGLALLTSGLLAACSGSKSNSAETKFGYVYSSDPETLDYVTSGKATTSDLVTNGVDGLLENDKYGNLVPSM
AKSWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADKKSEALYLVQNSIKGLDAYVNGQTKDFSTVGV
KAVDDYTVQYTLNKPEPYWNSKTTSAIMWPINAEFLKSKGNKFGQSTDPNSILYNGPFLMKAITAKSAVEYVKNKHYWDK
DKVNVDSIKLAYYDGQDQDSLARNFKDGAYTYARLFPASSNFSTFEKDFKDNIYTSEAGAGTAVLGLNIDRQTYNHTAKK
TDEEKNSTKKALLNKDFRQALNFALDRDSYAAQVNGKEGAAKAIRNMFVPSDFVQVGEKSFSDVVEEKLASYGDDWKGVK
LADSQNGLYNPDKAKAKFAKAKEALQAQGVQFPIHIDVPVIETSKNFVARMQSMKQSIEKVLGKENVVMDLNMMSEDDVM
NITYYAPNAASEDWDLSGIVGWTPDYQDPSTYLDILKSTSSDNTKTWFGFDSGSENAGAKAVGLDEYNKLVDEAGAETTD
IAKRYEKYAAAQAWLTDSSLVLPTMASTGAGTFVSRIQPFSGAFAQTGSKGSSTYFKYIKVGNDTVTKKDYEAAKKKWQK
EKAESNKKAQDELADHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=331798 EHW89_RS07320 WP_106382433.1 1498182..1500158(-) (amiA3) [Streptococcus periodonticum strain KCOM 2412]
ATGAAAAAAAGTAAAATCATCGCAGTTGCGGGGCTAGCTCTTTTAACGTCTGGTCTTTTAGCTGCTTGCTCGGGTTCGAA
ATCGAACTCAGCTGAAACAAAATTTGGTTATGTGTATTCTAGTGATCCAGAAACTTTGGATTATGTAACATCAGGAAAAG
CAACCACTAGCGATCTTGTGACAAATGGAGTTGACGGATTGTTAGAAAATGACAAATATGGAAATCTTGTACCATCAATG
GCTAAGTCATGGACTGTATCAAAAGATGGTTTAACCTATACTTATAAACTTCGTAAGGGTGCCAAATGGTATACATCAGA
AGGGGAAGAATACGCAGAAGTTAAAGCGCAAGACTTTGTAACTGGTTTGAAACATGCTGCCGATAAAAAATCTGAGGCGC
TTTATTTGGTTCAAAACTCAATTAAAGGTTTAGATGCTTACGTGAATGGTCAAACAAAAGACTTTTCAACGGTAGGTGTG
AAAGCAGTTGATGATTATACTGTTCAGTATACATTGAACAAGCCAGAACCATATTGGAATTCTAAGACAACCTCTGCCAT
TATGTGGCCAATCAATGCCGAATTTTTGAAATCTAAAGGAAATAAATTTGGCCAATCAACAGACCCTAACTCAATCCTTT
ATAATGGACCATTCTTGATGAAAGCTATCACAGCAAAATCTGCGGTAGAATATGTTAAAAACAAACATTATTGGGATAAA
GATAAAGTAAATGTTGATAGCATCAAGTTGGCTTATTATGATGGTCAAGACCAAGATTCATTAGCACGTAACTTTAAAGA
TGGTGCTTATACGTATGCACGTCTCTTCCCAGCAAGTTCAAACTTTTCAACTTTTGAAAAGGACTTCAAAGACAATATCT
ATACATCAGAAGCTGGTGCAGGAACAGCAGTTTTAGGACTTAATATTGACCGTCAAACGTACAACCACACTGCTAAAAAA
ACAGATGAAGAAAAAAATTCAACGAAAAAAGCATTGTTGAATAAAGACTTCCGTCAAGCGCTGAACTTTGCGCTTGACCG
CGACTCTTACGCTGCACAAGTCAATGGTAAAGAGGGCGCTGCTAAAGCAATCCGCAATATGTTTGTACCGTCTGACTTTG
TCCAAGTTGGAGAAAAATCATTTAGCGATGTTGTAGAAGAAAAATTAGCTAGCTATGGTGATGACTGGAAGGGTGTCAAA
TTAGCAGATTCACAAAACGGTTTGTACAATCCAGACAAAGCAAAAGCGAAATTTGCAAAAGCAAAAGAAGCATTGCAAGC
TCAAGGTGTGCAATTCCCAATCCACATAGATGTTCCTGTAATTGAAACTTCTAAAAACTTTGTTGCTCGTATGCAATCTA
TGAAACAATCTATTGAAAAAGTGCTTGGCAAAGAAAATGTTGTCATGGACTTGAATATGATGTCAGAAGATGATGTAATG
AACATCACTTATTATGCTCCGAATGCAGCTAGCGAAGATTGGGATCTCTCAGGTATCGTTGGTTGGACTCCTGACTATCA
AGACCCATCTACTTATCTTGACATTTTGAAATCAACATCTTCTGATAATACGAAAACTTGGTTTGGATTTGACTCTGGTA
GTGAAAATGCTGGTGCTAAAGCAGTTGGCTTGGACGAATATAATAAATTAGTCGATGAAGCAGGTGCAGAAACAACAGAC
ATTGCAAAACGTTATGAAAAATATGCAGCAGCACAAGCTTGGTTAACAGACAGTTCACTTGTCTTACCAACAATGGCTTC
AACAGGTGCCGGAACTTTTGTGTCACGCATTCAACCGTTCTCAGGTGCATTTGCGCAAACAGGTAGTAAAGGTAGCTCAA
CCTACTTCAAATACATTAAAGTCGGTAACGATACTGTCACTAAGAAAGACTATGAAGCAGCTAAGAAGAAATGGCAAAAA
GAAAAAGCCGAGTCTAATAAAAAAGCTCAAGATGAATTAGCTGATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

63.885

100

0.64
  amiA3 Streptococcus thermophilus LMG 18311

63.581

100

0.637
  amiA Streptococcus salivarius strain HSISS4

63.07

100

0.631

Multiple sequence alignment