Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EHW89_RS07305 Genome accession   NZ_CP034543
Coordinates   1493208..1494134 (-) Length   308 a.a.
NCBI ID   WP_003026180.1    Uniprot ID   -
Organism   Streptococcus periodonticum strain KCOM 2412     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1488208..1499134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHW89_RS07285 (EHW89_07285) - 1489192..1490157 (+) 966 WP_003026172.1 LacI family DNA-binding transcriptional regulator -
  EHW89_RS07290 (EHW89_07290) - 1490231..1491055 (-) 825 WP_117644841.1 Cof-type HAD-IIB family hydrolase -
  EHW89_RS07295 (EHW89_07295) amiF 1491198..1492121 (-) 924 WP_126467586.1 ATP-binding cassette domain-containing protein Regulator
  EHW89_RS07300 (EHW89_07300) amiE 1492132..1493199 (-) 1068 WP_004224088.1 ABC transporter ATP-binding protein Regulator
  EHW89_RS07305 (EHW89_07305) amiD 1493208..1494134 (-) 927 WP_003026180.1 oligopeptide ABC transporter permease OppC Regulator
  EHW89_RS07310 (EHW89_07310) amiC 1494134..1495630 (-) 1497 WP_022525149.1 ABC transporter permease Regulator
  EHW89_RS07315 (EHW89_07315) amiA3 1496006..1497985 (-) 1980 WP_126467588.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34488.54 Da        Isoelectric Point: 9.7392

>NTDB_id=331795 EHW89_RS07305 WP_003026180.1 1493208..1494134(-) (amiD) [Streptococcus periodonticum strain KCOM 2412]
MATIDKTKFQFVKRDDFASETIDAPAYSYWKSVMRQFLKKKSTVIMLGILVAIILMSFIYPIFSDFDFNDVSKVNDFGAR
YIKPNGQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRIMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRIQIMRYRDLEYNLASRTLGTPTLKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=331795 EHW89_RS07305 WP_003026180.1 1493208..1494134(-) (amiD) [Streptococcus periodonticum strain KCOM 2412]
ATGGCTACAATTGATAAGACTAAGTTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAACAATTGATGCTCCAGCCTA
TTCTTACTGGAAATCAGTTATGCGTCAGTTCCTAAAAAAGAAATCAACAGTTATCATGTTGGGAATTTTGGTCGCTATTA
TTTTGATGAGTTTCATTTATCCGATTTTCTCAGATTTTGACTTTAACGATGTCAGCAAGGTGAATGATTTCGGTGCGCGT
TATATTAAACCAAACGGTCAATATTGGTTTGGTACAGATAGCAACGGGAAATCTCTTTTTGACGGAGTATGGTTTGGAGC
TCGTAACTCCATCCTCATTTCTGTCATTGCAACCGTGATTAACTTAGTTATTGGTATTGTGATTGGTGGTATCTGGGGAA
TTTCAAAAACCGTTGACCGTATCATGATGGAAGTGTACAATATCATTTCTAACATCCCTTCTCTCTTGATTGTCATTGTC
TTGACTTATTCAATTGGTGCTGGTTTCTGGAACTTGATTTTTGCTATGACCATCACAGGTTGGGTTGGGATTGCTTATAC
AATTCGTATTCAAATCATGCGTTATCGCGACTTGGAATATAACCTTGCCAGCCGAACTTTGGGTACGCCAACACTGAAAA
TCATTGTGAAAAATATCATGCCACAATTGGTTTCTGTTATTGTGACCACGGCTTCGCAACTGCTTCCAAGTTTCATTTCT
TATGAAGCATTTCTATCGTTCTTTGGTTTAGGGCTTCCTGTCACAGTACCAAGTTTGGGACGGTTAATTTCAGATTATTC
ACAAAACGTGACAACAAATGCGTATCTTTTCTGGATTCCATTGACAACCTTGATTTTGGTTTCTCTTTCATTGTTCGTTG
TCGGTCAAAACTTAGCGGACGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

87.013

100

0.87
  amiD Streptococcus thermophilus LMG 18311

85.065

100

0.851
  amiD Streptococcus thermophilus LMD-9

85.065

100

0.851

Multiple sequence alignment