Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   EHW89_RS07295 Genome accession   NZ_CP034543
Coordinates   1491198..1492121 (-) Length   307 a.a.
NCBI ID   WP_126467586.1    Uniprot ID   -
Organism   Streptococcus periodonticum strain KCOM 2412     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1486198..1497121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHW89_RS07280 (EHW89_07280) - 1487754..1489211 (+) 1458 WP_126467584.1 sucrose-6-phosphate hydrolase -
  EHW89_RS07285 (EHW89_07285) - 1489192..1490157 (+) 966 WP_003026172.1 LacI family DNA-binding transcriptional regulator -
  EHW89_RS07290 (EHW89_07290) - 1490231..1491055 (-) 825 WP_117644841.1 Cof-type HAD-IIB family hydrolase -
  EHW89_RS07295 (EHW89_07295) amiF 1491198..1492121 (-) 924 WP_126467586.1 ATP-binding cassette domain-containing protein Regulator
  EHW89_RS07300 (EHW89_07300) amiE 1492132..1493199 (-) 1068 WP_004224088.1 ABC transporter ATP-binding protein Regulator
  EHW89_RS07305 (EHW89_07305) amiD 1493208..1494134 (-) 927 WP_003026180.1 oligopeptide ABC transporter permease OppC Regulator
  EHW89_RS07310 (EHW89_07310) amiC 1494134..1495630 (-) 1497 WP_022525149.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34833.00 Da        Isoelectric Point: 6.2511

>NTDB_id=331793 EHW89_RS07295 WP_126467586.1 1491198..1492121(-) (amiF) [Streptococcus periodonticum strain KCOM 2412]
MPEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSHGEIFFEGKKINGKKSKE
EESEIIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERKKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILEQKKVLKVYDANQHDYSTDKPEMVEIRPGHFVWANKAEVEKYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=331793 EHW89_RS07295 WP_126467586.1 1491198..1492121(-) (amiF) [Streptococcus periodonticum strain KCOM 2412]
ATGCCTGAAAAATTAGTAGAAGTTAAAGATTTGGAAATTTCCTTCGGTGAGGGAAGCAAGAAATTTGTTGCTGTTAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCACTTGTAGGAGAATCTGGTTCTGGTAAAACGACAATTGGTCGTG
CGATTATTGGTTTAAATGATACGAGTCATGGAGAGATTTTCTTTGAAGGGAAAAAAATCAATGGCAAAAAATCAAAAGAA
GAAGAGTCAGAAATCATTCGTAAAATTCAAATGATTTTCCAAGACCCTGCTGCTAGTTTGAATGAACGTGCGACAGTTGA
TTATATCATTTCGGAAGGCTTGTATAATTTCCATTTATTTAAAGATGAAGAAGAACGCAAGAAAAAAGTGAAAGATATTA
TTCATGAAGTTGGATTGTTATCAGAGCATTTAACACGTTACCCGCATGAATTTTCTGGTGGTCAACGTCAGCGGATTGGG
ATTGCTCGTGCGCTTGTTATGGAACCAGATTTTGTCATTGCAGATGAGCCGATTTCAGCTTTGGACGTGTCTGTGCGGGC
ACAAGTTTTAAACCTACTGAAAAAATTCCAAAAAGAATTAGGTTTGACTTATCTCTTTATTGCTCACGATTTATCGGTTG
TACGCTTCATTTCAGATCGTATTGCGGTTATTTATAAGGGTGTGATTGTCGAAGTAGCTGAAACAGAAGAACTCTTTAAC
AATCCAATTCATCCTTATACTCAGTCTTTATTGTCAGCTGTGCCAATTCCAGATCCAATCTTGGAACAGAAGAAAGTGTT
GAAAGTCTATGATGCTAATCAGCATGATTATTCAACGGATAAGCCAGAAATGGTCGAAATTCGTCCTGGACATTTTGTGT
GGGCTAATAAAGCAGAAGTTGAAAAATATAAAAAAGAATTATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

87.908

99.674

0.876
  amiF Streptococcus salivarius strain HSISS4

87.908

99.674

0.876
  amiF Streptococcus thermophilus LMD-9

87.582

99.674

0.873

Multiple sequence alignment