Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EJ378_RS18815 Genome accession   NZ_CP034541
Coordinates   3956480..3956941 (-) Length   153 a.a.
NCBI ID   WP_206514584.1    Uniprot ID   -
Organism   Brevibacillus marinus strain SCSIO 07484     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3951480..3961941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJ378_RS18795 rplI 3952669..3953112 (-) 444 WP_126429191.1 50S ribosomal protein L9 -
  EJ378_RS18800 - 3953208..3955148 (-) 1941 WP_126429193.1 DHH family phosphoesterase -
  EJ378_RS18805 - 3955164..3956102 (-) 939 WP_126429195.1 YybS family protein -
  EJ378_RS18810 rpsR 3956187..3956417 (-) 231 WP_126429197.1 30S ribosomal protein S18 -
  EJ378_RS18815 ssbA 3956480..3956941 (-) 462 WP_206514584.1 single-stranded DNA-binding protein Machinery gene
  EJ378_RS18820 rpsF 3956966..3957253 (-) 288 WP_126429201.1 30S ribosomal protein S6 -
  EJ378_RS18825 ychF 3957398..3958495 (-) 1098 WP_126429203.1 redox-regulated ATPase YchF -
  EJ378_RS18830 pepF 3958627..3960546 (-) 1920 WP_126429205.1 oligoendopeptidase F -
  EJ378_RS18835 - 3960818..3960907 (+) 90 WP_126429207.1 YjcZ family sporulation protein -
  EJ378_RS18840 - 3961137..3961358 (-) 222 WP_126429209.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17005.91 Da        Isoelectric Point: 4.6810

>NTDB_id=331743 EJ378_RS18815 WP_206514584.1 3956480..3956941(-) (ssbA) [Brevibacillus marinus strain SCSIO 07484]
MLNRVILIGNLTRDPELRYTPSGVAVTTFTLAVNRPYTNQSGEREADFINVVAWRQLADLCANYLRKGRQAAVEGRLQTR
SYENKEGRKVYVTEVVAENVQFLGSRSGGEGSGFDPVFGEPKPFGKRNDPDSYDDPFADAGKPIDISDDDLPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=331743 EJ378_RS18815 WP_206514584.1 3956480..3956941(-) (ssbA) [Brevibacillus marinus strain SCSIO 07484]
TTGTTGAATCGCGTCATTCTGATTGGCAATCTTACCAGAGATCCAGAATTGCGATACACTCCGAGCGGCGTAGCGGTCAC
GACCTTTACACTCGCCGTCAATCGCCCGTACACCAATCAGTCGGGAGAGAGGGAGGCGGACTTCATCAACGTCGTCGCTT
GGCGTCAGTTGGCTGATCTTTGTGCCAATTACCTGCGCAAGGGCAGACAAGCCGCCGTTGAGGGCAGATTGCAGACGAGA
TCGTATGAAAACAAGGAAGGCCGCAAGGTGTATGTGACGGAAGTAGTCGCGGAGAACGTGCAATTTCTGGGGAGCCGATC
CGGTGGAGAAGGAAGCGGGTTCGATCCGGTTTTTGGGGAACCCAAACCGTTCGGCAAGCGGAATGATCCGGATTCATACG
ATGACCCCTTCGCTGATGCTGGCAAGCCGATCGACATCTCCGATGACGACTTGCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.654
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.562
  ssb Vibrio cholerae strain A1552

36.782

100

0.418
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.311

67.32

0.379
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.379
  ssb Neisseria gonorrhoeae MS11

33.14

100

0.373
  ssb Neisseria meningitidis MC58

33.14

100

0.373

Multiple sequence alignment