Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EJN89_RS11095 Genome accession   NZ_CP034441
Coordinates   2156625..2157095 (+) Length   156 a.a.
NCBI ID   WP_000934765.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PMB 81-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2145262..2186593 2156625..2157095 within 0


Gene organization within MGE regions


Location: 2145262..2186593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN89_RS11005 - 2145262..2146299 (-) 1038 WP_000857182.1 site-specific integrase -
  EJN89_RS11010 sek 2146383..2147111 (-) 729 WP_000733771.1 staphylococcal enterotoxin type K -
  EJN89_RS11015 seq 2147135..2147863 (-) 729 WP_001033320.1 staphylococcal enterotoxin type Q -
  EJN89_RS11020 - 2148059..2148829 (-) 771 WP_001208482.1 S24 family peptidase -
  EJN89_RS11025 - 2148988..2149212 (+) 225 WP_000338186.1 DUF739 family protein -
  EJN89_RS11030 - 2149230..2149490 (+) 261 WP_000435341.1 transcriptional regulator -
  EJN89_RS11035 - 2149514..2150053 (-) 540 WP_000351243.1 hypothetical protein -
  EJN89_RS11040 - 2150110..2150859 (+) 750 WP_001148337.1 phage antirepressor KilAC domain-containing protein -
  EJN89_RS11045 - 2150875..2151072 (+) 198 WP_001148861.1 hypothetical protein -
  EJN89_RS11050 - 2151103..2151243 (+) 141 WP_000939496.1 hypothetical protein -
  EJN89_RS11055 - 2151258..2151890 (-) 633 WP_000275058.1 hypothetical protein -
  EJN89_RS11060 - 2151949..2152269 (+) 321 WP_001120197.1 DUF771 domain-containing protein -
  EJN89_RS11065 - 2152266..2152427 (+) 162 WP_000066020.1 DUF1270 domain-containing protein -
  EJN89_RS11070 - 2152520..2152780 (+) 261 WP_000291488.1 DUF1108 family protein -
  EJN89_RS11075 - 2152789..2153052 (+) 264 WP_001205732.1 hypothetical protein -
  EJN89_RS11080 - 2153049..2155004 (+) 1956 WP_047211354.1 AAA family ATPase -
  EJN89_RS11085 - 2155006..2155926 (+) 921 WP_000138475.1 recombinase RecT -
  EJN89_RS11090 - 2156007..2156624 (+) 618 WP_072353921.1 MBL fold metallo-hydrolase -
  EJN89_RS11095 ssbA 2156625..2157095 (+) 471 WP_000934765.1 single-stranded DNA-binding protein Machinery gene
  EJN89_RS11100 - 2157125..2158018 (+) 894 WP_000148328.1 DnaD domain-containing protein -
  EJN89_RS11105 - 2158025..2158243 (+) 219 WP_000338527.1 hypothetical protein -
  EJN89_RS11110 - 2158252..2158656 (+) 405 WP_000401978.1 RusA family crossover junction endodeoxyribonuclease -
  EJN89_RS11115 - 2158669..2158920 (+) 252 Protein_2082 SA1788 family PVL leukocidin-associated protein -
  EJN89_RS11120 - 2158905..2159000 (+) 96 Protein_2083 DUF1381 domain-containing protein -
  EJN89_RS11125 - 2158997..2159146 (+) 150 WP_000595265.1 transcriptional activator RinB -
  EJN89_RS11130 - 2159305..2159955 (+) 651 WP_001005262.1 hypothetical protein -
  EJN89_RS11135 - 2159955..2160155 (+) 201 WP_070957581.1 DUF1514 family protein -
  EJN89_RS11145 - 2160178..2160639 (+) 462 WP_117207350.1 hypothetical protein -
  EJN89_RS11150 - 2160754..2161206 (+) 453 WP_000406191.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  EJN89_RS11155 - 2161222..2161566 (+) 345 WP_000817289.1 HNH endonuclease -
  EJN89_RS11160 - 2161695..2162162 (+) 468 WP_000919026.1 phage terminase small subunit P27 family -
  EJN89_RS11165 - 2162165..2163859 (+) 1695 WP_070957579.1 phage terminase family protein -
  EJN89_RS11170 - 2163873..2164073 (+) 201 WP_000365299.1 hypothetical protein -
  EJN89_RS11175 - 2164079..2165329 (+) 1251 WP_000511067.1 phage portal protein -
  EJN89_RS11180 - 2165322..2165906 (+) 585 WP_000032525.1 HK97 family phage prohead protease -
  EJN89_RS11185 - 2165994..2167241 (+) 1248 WP_000849950.1 phage major capsid protein -
  EJN89_RS11190 - 2167277..2167435 (+) 159 WP_001252099.1 hypothetical protein -
  EJN89_RS11195 - 2167444..2167776 (+) 333 WP_001177483.1 head-tail connector protein -
  EJN89_RS11200 - 2167763..2168098 (+) 336 WP_000975314.1 head-tail adaptor protein -
  EJN89_RS11205 - 2168098..2168475 (+) 378 WP_000501244.1 HK97-gp10 family putative phage morphogenesis protein -
  EJN89_RS11210 - 2168472..2168852 (+) 381 WP_000611454.1 hypothetical protein -
  EJN89_RS11215 - 2168853..2169806 (+) 954 WP_000570652.1 major tail protein -
  EJN89_RS11220 - 2169871..2170317 (+) 447 WP_000442601.1 hypothetical protein -
  EJN89_RS11225 - 2170377..2170499 (+) 123 WP_000570353.1 hypothetical protein -
  EJN89_RS11230 - 2170555..2175204 (+) 4650 WP_125998344.1 phage tail tape measure protein -
  EJN89_RS11235 - 2175204..2176694 (+) 1491 WP_117207351.1 phage tail domain-containing protein -
  EJN89_RS11240 - 2176710..2180492 (+) 3783 WP_000582130.1 phage tail spike protein -
  EJN89_RS11245 - 2180485..2180637 (+) 153 WP_001000058.1 hypothetical protein -
  EJN89_RS11250 - 2180683..2180970 (+) 288 WP_001262621.1 hypothetical protein -
  EJN89_RS11255 - 2181026..2181400 (+) 375 WP_000340977.1 hypothetical protein -
  EJN89_RS11260 sea 2181773..2182546 (+) 774 WP_000750412.1 staphylococcal enterotoxin type A -
  EJN89_RS11265 pepG1 2182697..2182831 (+) 135 WP_000226108.1 type I toxin-antitoxin system toxin PepG1 -
  EJN89_RS11270 - 2182884..2182991 (-) 108 WP_031762631.1 hypothetical protein -
  EJN89_RS11275 - 2183043..2183297 (+) 255 WP_000611512.1 phage holin -
  EJN89_RS11280 - 2183309..2184064 (+) 756 WP_000861025.1 CHAP domain-containing protein -
  EJN89_RS11285 sak 2184255..2184746 (+) 492 WP_000920038.1 staphylokinase -
  EJN89_RS11305 - 2185397..2185732 (+) 336 Protein_2116 SH3 domain-containing protein -
  EJN89_RS11310 scn 2186243..2186593 (+) 351 WP_000702263.1 complement inhibitor SCIN-A -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17673.54 Da        Isoelectric Point: 4.9627

>NTDB_id=331306 EJN89_RS11095 WP_000934765.1 2156625..2157095(+) (ssbA) [Staphylococcus aureus strain PMB 81-4]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=331306 EJN89_RS11095 WP_000934765.1 2156625..2157095(+) (ssbA) [Staphylococcus aureus strain PMB 81-4]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Vibrio cholerae strain A1552

31.492

100

0.365
  ssb Neisseria meningitidis MC58

32.948

100

0.365
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment