Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | EJN89_RS01650 | Genome accession | NZ_CP034441 |
| Coordinates | 314212..314682 (-) | Length | 156 a.a. |
| NCBI ID | WP_016047540.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain PMB 81-4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 281153..324844 | 314212..314682 | within | 0 |
Gene organization within MGE regions
Location: 281153..324844
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EJN89_RS01420 | - | 281153..281710 (-) | 558 | WP_000528632.1 | PBECR4 domain-containing protein | - |
| EJN89_RS01425 | - | 282435..283889 (-) | 1455 | WP_000909217.1 | N-acetylmuramoyl-L-alanine amidase | - |
| EJN89_RS01430 | - | 283900..284202 (-) | 303 | WP_125998305.1 | phage holin | - |
| EJN89_RS01435 | - | 284258..284653 (-) | 396 | WP_000398878.1 | hypothetical protein | - |
| EJN89_RS01440 | - | 284659..285831 (-) | 1173 | WP_001837327.1 | BppU family phage baseplate upper protein | - |
| EJN89_RS01445 | - | 285844..287742 (-) | 1899 | WP_001837328.1 | glucosaminidase domain-containing protein | - |
| EJN89_RS01450 | - | 287879..288178 (-) | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| EJN89_RS01455 | - | 288219..288392 (-) | 174 | WP_015990323.1 | XkdX family protein | - |
| EJN89_RS01460 | - | 288383..288778 (-) | 396 | WP_125998307.1 | DUF2977 domain-containing protein | - |
| EJN89_RS01465 | - | 288778..290601 (-) | 1824 | WP_016047530.1 | BppU family phage baseplate upper protein | - |
| EJN89_RS01470 | - | 290601..292511 (-) | 1911 | WP_000369018.1 | hypothetical protein | - |
| EJN89_RS01475 | - | 292526..294427 (-) | 1902 | WP_001657243.1 | SGNH/GDSL hydrolase family protein | - |
| EJN89_RS01480 | - | 294436..295383 (-) | 948 | WP_001565386.1 | phage tail family protein | - |
| EJN89_RS01485 | - | 295396..298863 (-) | 3468 | WP_103150437.1 | hypothetical protein | - |
| EJN89_RS01490 | - | 298880..299224 (-) | 345 | WP_001837332.1 | hypothetical protein | - |
| EJN89_RS01495 | - | 299254..299619 (-) | 366 | WP_001100161.1 | tail assembly chaperone | - |
| EJN89_RS01500 | - | 299681..300262 (-) | 582 | WP_001837333.1 | phage major tail protein, TP901-1 family | - |
| EJN89_RS01505 | - | 300281..300664 (-) | 384 | WP_001837334.1 | hypothetical protein | - |
| EJN89_RS01510 | - | 300676..301023 (-) | 348 | WP_001017811.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| EJN89_RS01515 | - | 301023..301325 (-) | 303 | WP_001268309.1 | hypothetical protein | - |
| EJN89_RS01520 | - | 301322..301654 (-) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| EJN89_RS01525 | - | 301663..301950 (-) | 288 | WP_001837335.1 | hypothetical protein | - |
| EJN89_RS01530 | - | 301972..302946 (-) | 975 | WP_001837336.1 | phage major capsid protein | - |
| EJN89_RS01535 | - | 302960..303574 (-) | 615 | WP_000354309.1 | DUF4355 domain-containing protein | - |
| EJN89_RS01540 | - | 303709..303879 (-) | 171 | WP_000072207.1 | hypothetical protein | - |
| EJN89_RS01545 | - | 303952..304947 (-) | 996 | WP_001837337.1 | minor capsid protein | - |
| EJN89_RS01550 | - | 304954..306489 (-) | 1536 | WP_001837338.1 | phage portal protein | - |
| EJN89_RS01555 | - | 306500..307777 (-) | 1278 | WP_016047536.1 | PBSX family phage terminase large subunit | - |
| EJN89_RS01560 | - | 307764..308204 (-) | 441 | WP_001003271.1 | terminase small subunit | - |
| EJN89_RS01565 | - | 308391..308810 (-) | 420 | WP_000058632.1 | transcriptional regulator | - |
| EJN89_RS01570 | - | 308825..308971 (-) | 147 | WP_000989998.1 | hypothetical protein | - |
| EJN89_RS01575 | - | 308972..309337 (-) | 366 | WP_000455357.1 | hypothetical protein | - |
| EJN89_RS01580 | - | 309338..309511 (-) | 174 | WP_000595256.1 | transcriptional activator RinB | - |
| EJN89_RS01585 | - | 309508..309714 (-) | 207 | WP_000195810.1 | DUF1381 domain-containing protein | - |
| EJN89_RS01590 | - | 309751..310281 (-) | 531 | WP_000185706.1 | dUTPase | - |
| EJN89_RS01595 | - | 310274..310480 (-) | 207 | WP_000097971.1 | Lar family restriction alleviation protein | - |
| EJN89_RS01600 | - | 310480..310722 (-) | 243 | WP_001065066.1 | DUF1024 family protein | - |
| EJN89_RS01605 | - | 310715..310999 (-) | 285 | WP_125998309.1 | hypothetical protein | - |
| EJN89_RS01610 | - | 310996..311445 (-) | 450 | WP_016047537.1 | YopX family protein | - |
| EJN89_RS15085 | - | 311442..311636 (-) | 195 | WP_000983954.1 | hypothetical protein | - |
| EJN89_RS01620 | - | 311633..312019 (-) | 387 | WP_000693615.1 | hypothetical protein | - |
| EJN89_RS01625 | - | 312033..312275 (-) | 243 | WP_001837466.1 | SAV1978 family virulence-associated passenger protein | - |
| EJN89_RS01630 | - | 312279..312647 (-) | 369 | WP_000101275.1 | SA1788 family PVL leukocidin-associated protein | - |
| EJN89_RS01635 | - | 312660..313064 (-) | 405 | WP_029052043.1 | RusA family crossover junction endodeoxyribonuclease | - |
| EJN89_RS01640 | - | 313073..313291 (-) | 219 | WP_000338528.1 | hypothetical protein | - |
| EJN89_RS01645 | - | 313298..314182 (-) | 885 | WP_016047539.1 | DnaD domain protein | - |
| EJN89_RS01650 | ssbA | 314212..314682 (-) | 471 | WP_016047540.1 | single-stranded DNA-binding protein | Machinery gene |
| EJN89_RS01655 | - | 314683..315300 (-) | 618 | WP_072528355.1 | MBL fold metallo-hydrolase | - |
| EJN89_RS01660 | - | 315381..316301 (-) | 921 | WP_000138475.1 | recombinase RecT | - |
| EJN89_RS01665 | - | 316303..318246 (-) | 1944 | WP_000700571.1 | AAA family ATPase | - |
| EJN89_RS01670 | - | 318255..318518 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| EJN89_RS01675 | - | 318527..318787 (-) | 261 | WP_001837398.1 | DUF1108 family protein | - |
| EJN89_RS01680 | - | 318851..319165 (-) | 315 | WP_001280581.1 | helix-turn-helix transcriptional regulator | - |
| EJN89_RS01685 | - | 319170..319340 (-) | 171 | WP_001837399.1 | DUF1270 domain-containing protein | - |
| EJN89_RS15185 | - | 319333..319461 (-) | 129 | WP_001559112.1 | hypothetical protein | - |
| EJN89_RS01690 | - | 319520..319765 (+) | 246 | WP_000122246.1 | hypothetical protein | - |
| EJN89_RS01695 | - | 319733..319936 (-) | 204 | Protein_323 | hypothetical protein | - |
| EJN89_RS01700 | - | 319989..320183 (-) | 195 | WP_000390105.1 | hypothetical protein | - |
| EJN89_RS01705 | - | 320200..320988 (-) | 789 | WP_001148580.1 | phage antirepressor KilAC domain-containing protein | - |
| EJN89_RS01710 | - | 321004..321258 (-) | 255 | Protein_326 | helix-turn-helix transcriptional regulator | - |
| EJN89_RS01715 | - | 321449..322087 (+) | 639 | WP_000874711.1 | XRE family transcriptional regulator | - |
| EJN89_RS01720 | - | 322144..322329 (+) | 186 | WP_000446800.1 | hypothetical protein | - |
| EJN89_RS01725 | - | 322382..322882 (+) | 501 | WP_001837400.1 | hypothetical protein | - |
| EJN89_RS01730 | - | 322886..323401 (+) | 516 | WP_000826264.1 | hypothetical protein | - |
| EJN89_RS01735 | - | 323459..324844 (+) | 1386 | WP_000861313.1 | recombinase family protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17662.58 Da Isoelectric Point: 4.9628
>NTDB_id=331285 EJN89_RS01650 WP_016047540.1 314212..314682(-) (ssbA) [Staphylococcus aureus strain PMB 81-4]
MLNRVVLVGRLTKDPEYRTTPSGVSVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=331285 EJN89_RS01650 WP_016047540.1 314212..314682(-) (ssbA) [Staphylococcus aureus strain PMB 81-4]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.627 |
100 |
0.654 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
67.949 |
0.41 |
| ssb | Glaesserella parasuis strain SC1401 |
33.333 |
100 |
0.378 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |